RNA id: TU489595


Basic Information

Item Value
RNA id TU489595
length 322
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G426369
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13519885 ~ 13525938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTATCACATTTGAGATGTTGTCCAATGTCGGTGGTGGAATTAATCTTGTTGTTTTACAGCTGTAATTACCAGAGTCACTGGGCTGAACATTTTCTATACTTAGTGTAAAAGACGTTCTGTTGAATGTAAAATGAGGAATGCAATCACCGGAGGAAGATCCAGTAATTTTATTAAAATTCCATTCACAGATAGTTTTGTTAGTTGCACTATTTTTTGTCCACTTTCCAGTAACTTGTACACTGTCATCAGGTGGAGAGTGGCAGGGCAGATGGACAGTCGCTCCTTCAACTGCTCTGATAGACCCCGCATCTGTGGATTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489727 lncRNA upstream 4053 13514906 ~ 13515832 (+) True G426498
TU489726 lncRNA upstream 14743 13504792 ~ 13505142 (+) True G426497
TU489724 lncRNA upstream 33669 13485979 ~ 13486216 (+) True G426495
TU489723 lncRNA upstream 33928 13485732 ~ 13485957 (+) True G426494
TU489722 lncRNA upstream 34307 13485377 ~ 13485578 (+) True G426493
TU489606 lncRNA downstream 20624 13546562 ~ 13550083 (+) True G426380
TU489741 lncRNA downstream 48573 13574511 ~ 13575026 (+) True G426512
TU489747 lncRNA downstream 54899 13580837 ~ 13581043 (+) True G426518
TU489603 lncRNA downstream 90049 13615987 ~ 13618730 (+) True G426377
TU489574 lncRNA downstream 154687 13680625 ~ 13689596 (+) True G426348
CI01000304_13435609_13438459.mRNA mRNA upstream 81155 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13331382_13338351.mRNA mRNA upstream 180637 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_12828251_12839287.mRNA mRNA upstream 679894 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 694572 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 745573 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_13578347_13595075.mRNA mRNA downstream 52111 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 87088 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 205304 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13744571_13748279.mRNA mRNA downstream 217737 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13932457_13932762.mRNA mRNA downstream 406011 13931949 ~ 13933084 (+) True CI01000304_13932457_13932762
TU488854 other upstream 1080799 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1080799 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1080799 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2964181 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 3326990 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 30513 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 804110 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1422952 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2359516 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2557292 16083230 ~ 16083714 (+) True G428017

Expression Profile