RNA id: TU489747


Basic Information

Item Value
RNA id TU489747
length 207
lncRNA type intronic
GC content 0.46
exon number 1
gene id G426518
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13580837 ~ 13581043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAGAGCGAGTGACATACGCTTCAGAGCAATCCCAACACACACGAAACAGTCCCCGAGTGCAAACACACATTAGTGAACAACACTGATGTGTTTGCCCCGTATTTACTCATTGCATACGACTATTGAAAGCTCATTGTGGTTAAAAGACGATAAGCCATGCGTGTGTTCCTTCGTGTCACAGCCTCGTTCTCTCACATACTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489741 lncRNA upstream 5811 13574511 ~ 13575026 (+) True G426512
TU489606 lncRNA upstream 30754 13546562 ~ 13550083 (+) True G426380
TU489586 lncRNA upstream 47756 13519424 ~ 13533081 (+) True G426360
TU489595 lncRNA upstream 54899 13519885 ~ 13525938 (+) True G426369
TU489727 lncRNA upstream 65005 13514906 ~ 13515832 (+) True G426498
TU489603 lncRNA downstream 34944 13615987 ~ 13618730 (+) True G426377
TU489574 lncRNA downstream 99582 13680625 ~ 13689596 (+) True G426348
TU489755 lncRNA downstream 158657 13739700 ~ 13741560 (+) True G426526
TU489821 lncRNA downstream 291862 13872905 ~ 13873118 (+) True G426592
TU489532 lncRNA downstream 395922 13976965 ~ 13978162 (+) True G426307
CI01000304_13435609_13438459.mRNA mRNA upstream 142107 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13331382_13338351.mRNA mRNA upstream 241589 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_12828251_12839287.mRNA mRNA upstream 740846 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 755524 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 806525 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_13613026_13686604.mRNA mRNA downstream 31983 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 150199 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13744571_13748279.mRNA mRNA downstream 162632 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13932457_13932762.mRNA mRNA downstream 350906 13931949 ~ 13933084 (+) True CI01000304_13932457_13932762
CI01000304_13947668_13967998.mRNA mRNA downstream 365115 13946158 ~ 13969190 (+) True CI01000304_13947668_13967998
TU489575 other upstream 1990 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 1141751 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1141751 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1141751 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 3025133 10555614 ~ 10555704 (+) True G424559
TU489538 other downstream 749005 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1367847 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2304411 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2502187 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 2923819 16513714 ~ 16541045 (+) True G428096

Expression Profile