RNA id: TU490337


Basic Information

Item Value
RNA id TU490337
length 224
lncRNA type intronic
GC content 0.39
exon number 1
gene id G427064
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13589147 ~ 13589370 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAGTTGATCGTCAAACCGTTCTTGAATTACGCGCGAAAGAATTTGAAGAAGAGCACACCAAAATGAATTTGAGGCTATCGCTGCATCCGAAATCGAATACTCTACTATATAGTACGCAAAAATCAGTATGCGAACAGAGTAGTATGTCCGAATTCATAGTATTCGAAAAACAGTAGGCGAAAAGTACCAGGATGACTTACTACTTACGGCAAGATTCTGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490264 lncRNA downstream 55603 13533250 ~ 13533544 (-) True CI01000304_13532811_13534129
TU490271 lncRNA downstream 75321 13510079 ~ 13513826 (-) True G427000
TU490326 lncRNA downstream 83075 13505845 ~ 13506072 (-) True G427055
TU490323 lncRNA downstream 86732 13502150 ~ 13502415 (-) True G427052
TU490321 lncRNA downstream 89883 13499032 ~ 13499264 (-) True G427050
TU490355 lncRNA upstream 20016 13609386 ~ 13609600 (-) True G427076
TU490359 lncRNA upstream 22768 13612138 ~ 13613990 (-) True G427077
TU490418 lncRNA upstream 192435 13781805 ~ 13782038 (-) True G427130
TU490424 lncRNA upstream 215096 13804466 ~ 13804728 (-) True G427136
TU490432 lncRNA upstream 280418 13869788 ~ 13870045 (-) True G427144
CI01000304_13541959_13564807.mRNA mRNA downstream 24340 13541225 ~ 13564807 (-) True CI01000304_13541959_13564807
CI01000304_13532811_13534129.mRNA mRNA downstream 55018 13532811 ~ 13534129 (-) False CI01000304_13532811_13534129
CI01000304_13529418_13530787.mRNA mRNA downstream 58360 13529130 ~ 13530787 (-) False CI01000304_13529418_13530787
CI01000304_13517595_13527868.mRNA mRNA downstream 61279 13517176 ~ 13527868 (-) True CI01000304_13517595_13527868
CI01000304_13479162_13481853.mRNA mRNA downstream 106853 13478741 ~ 13482294 (-) True CI01000304_13479162_13481853
CI01000304_13692322_13711234.mRNA mRNA upstream 102588 13691958 ~ 13711234 (-) True CI01000304_13692322_13711234
CI01000304_13741930_13742220.mRNA mRNA upstream 152324 13741694 ~ 13742868 (-) True CI01000304_13741930_13742220
CI01000304_13903994_13909017.mRNA mRNA upstream 314346 13903716 ~ 13909017 (-) True CI01000304_13903994_13909017
CI01000304_13914502_13920992.mRNA mRNA upstream 324617 13913987 ~ 13920992 (-) True CI01000304_13914502_13920992
CI01000304_13979830_13985175.mRNA mRNA upstream 390420 13979790 ~ 13985589 (-) True CI01000304_13979830_13985175
TU490328 other downstream 81225 13507641 ~ 13507922 (-) True G427057
TU489350 other downstream 549832 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 1029012 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 1029012 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 1248919 12336701 ~ 12340228 (-) True G426106
TU490473 other upstream 342421 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 600098 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 679053 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 694301 14283671 ~ 14286873 (-) True G427362
TU490815 other upstream 772078 14361448 ~ 14361892 (-) True G427423

Expression Profile