Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU489603 |
| length | 2607 |
| lncRNA type | intronic |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G426377 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 13615987 ~ 13618730 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU489747 | lncRNA | upstream | 34944 | 13580837 ~ 13581043 (+) | True | G426518 |
| TU489741 | lncRNA | upstream | 40961 | 13574511 ~ 13575026 (+) | True | G426512 |
| TU489606 | lncRNA | upstream | 65904 | 13546562 ~ 13550083 (+) | True | G426380 |
| TU489586 | lncRNA | upstream | 82906 | 13519424 ~ 13533081 (+) | True | G426360 |
| TU489595 | lncRNA | upstream | 90049 | 13519885 ~ 13525938 (+) | True | G426369 |
| TU489574 | lncRNA | downstream | 61895 | 13680625 ~ 13689596 (+) | True | G426348 |
| TU489755 | lncRNA | downstream | 120970 | 13739700 ~ 13741560 (+) | True | G426526 |
| TU489821 | lncRNA | downstream | 254175 | 13872905 ~ 13873118 (+) | True | G426592 |
| TU489532 | lncRNA | downstream | 358235 | 13976965 ~ 13978162 (+) | True | G426307 |
| TU489588 | lncRNA | downstream | 433018 | 14051748 ~ 14062044 (+) | True | G426362 |
| CI01000304_13578347_13595075.mRNA | mRNA | upstream | 20890 | 13578049 ~ 13595097 (+) | False | CI01000304_13578347_13595075 |
| CI01000304_13435609_13438459.mRNA | mRNA | upstream | 177257 | 13435507 ~ 13438730 (+) | True | CI01000304_13435609_13438459 |
| CI01000304_13331382_13338351.mRNA | mRNA | upstream | 276739 | 13331382 ~ 13339248 (+) | True | CI01000304_13331382_13338351 |
| CI01000304_12828251_12839287.mRNA | mRNA | upstream | 775996 | 12827314 ~ 12839991 (+) | True | CI01000304_12828251_12839287 |
| CI01000304_12819247_12825161.mRNA | mRNA | upstream | 790674 | 12817979 ~ 12825313 (+) | True | CI01000304_12819247_12825161 |
| CI01000304_13731299_13731640.mRNA | mRNA | downstream | 112512 | 13731242 ~ 13731650 (+) | True | CI01000304_13731299_13731640 |
| CI01000304_13744571_13748279.mRNA | mRNA | downstream | 124945 | 13743675 ~ 13748318 (+) | True | CI01000304_13744571_13748279 |
| CI01000304_13932457_13932762.mRNA | mRNA | downstream | 313219 | 13931949 ~ 13933084 (+) | True | CI01000304_13932457_13932762 |
| CI01000304_13947668_13967998.mRNA | mRNA | downstream | 327428 | 13946158 ~ 13969190 (+) | True | CI01000304_13947668_13967998 |
| CI01000304_13989055_14004354.mRNA | mRNA | downstream | 370325 | 13989055 ~ 14004526 (+) | True | CI01000304_13989055_14004354 |
| TU489575 | other | upstream | 37140 | 13556451 ~ 13573943 (+) | True | G426349 |
| TU488854 | other | upstream | 1176901 | 12434972 ~ 12439086 (+) | False | CI01000304_12437868_12439019 |
| TU488858 | other | upstream | 1176901 | 12436554 ~ 12436605 (+) | True | G425718 |
| TU488852 | other | upstream | 1176901 | 12437804 ~ 12439086 (+) | True | CI01000304_12437868_12439019 |
| TU487556 | other | upstream | 3060283 | 10555614 ~ 10555704 (+) | True | G424559 |
| TU489538 | other | downstream | 711318 | 14330048 ~ 14330886 (+) | True | G426312 |
| TU490061 | other | downstream | 1330160 | 14948890 ~ 14950592 (+) | True | G426828 |
| TU491290 | other | downstream | 2266724 | 15885454 ~ 15889591 (+) | True | G427860 |
| TU491458 | other | downstream | 2464500 | 16083230 ~ 16083714 (+) | True | G428017 |
| TU491561 | other | downstream | 2886132 | 16513714 ~ 16541045 (+) | True | G428096 |
