RNA id: TU489821


Basic Information

Item Value
RNA id TU489821
length 214
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G426592
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13872905 ~ 13873118 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCAAGCTGTCTTCTATGTGGGTGCAAAACCGCAGTTGAAAAACGTAACTTTATTCTTCAGAGAAACCTTGAATCATTATTCCCGAATTTGGTTGTGTTGGCTGGGGATATCTCTATATTCTATGGGCTCTATATATTCTAGCCACCAGCATGAGTTTTTTGAGGCGACCGTTATTTTTTTAGAACATTATTTTAGAAAGTATTAATTCCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489755 lncRNA upstream 131345 13739700 ~ 13741560 (+) True G426526
TU489574 lncRNA upstream 183309 13680625 ~ 13689596 (+) True G426348
TU489603 lncRNA upstream 254175 13615987 ~ 13618730 (+) True G426377
TU489747 lncRNA upstream 291862 13580837 ~ 13581043 (+) True G426518
TU489741 lncRNA upstream 297879 13574511 ~ 13575026 (+) True G426512
TU489532 lncRNA downstream 103847 13976965 ~ 13978162 (+) True G426307
TU489588 lncRNA downstream 178630 14051748 ~ 14062044 (+) True G426362
TU489601 lncRNA downstream 211920 14085038 ~ 14095622 (+) True G426375
TU489578 lncRNA downstream 242631 14115749 ~ 14123481 (+) True G426352
TU489577 lncRNA downstream 252200 14137145 ~ 14138649 (+) True G426351
CI01000304_13744571_13748279.mRNA mRNA upstream 124587 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13731299_13731640.mRNA mRNA upstream 141255 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13613026_13686604.mRNA mRNA upstream 186301 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13578347_13595075.mRNA mRNA upstream 277808 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13435609_13438459.mRNA mRNA upstream 434175 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13932457_13932762.mRNA mRNA downstream 58831 13931949 ~ 13933084 (+) True CI01000304_13932457_13932762
CI01000304_13947668_13967998.mRNA mRNA downstream 73040 13946158 ~ 13969190 (+) True CI01000304_13947668_13967998
CI01000304_13989055_14004354.mRNA mRNA downstream 115937 13989055 ~ 14004526 (+) True CI01000304_13989055_14004354
CI01000304_14005720_14006514.mRNA mRNA downstream 132602 14005720 ~ 14006860 (+) True CI01000304_14005720_14006514
CI01000304_14011581_14044797.mRNA mRNA downstream 138208 14011326 ~ 14044960 (+) True CI01000304_14011581_14044797
TU489575 other upstream 294058 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 1433819 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1433819 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1433819 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 3317201 10555614 ~ 10555704 (+) True G424559
TU489538 other downstream 456930 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1075772 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2012336 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2210112 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 2631744 16513714 ~ 16541045 (+) True G428096

Expression Profile