RNA id: TCONS_00019759


Basic Information

Item Value
RNA id TCONS_00019759
length 547
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_009892
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23837847 ~ 23977525 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTTCGACAAAGGTCTGGCTGACGTTCCTCTTCAGATTTACTCCTACACCTGCACTTCTAAAGATGTCCAGATTGGTGCTCCTTGTTCTGTTTGTGACATTGCAAGCTTGCTTGACCTTGTCCAACCCGTTGCCAACTACAGCTCCAGACAATGCAGGTCTTCTTGAAAGAGCAAAGCAGTTGTACAGtgtttgtttttgtgttacaGAGGCACAAAGGCTAAAGTTCTAGATGTTGGCAAGACAGTGGCTGGTTATGCTGGCATGTACTATGAGGATCATCTAAAACCCGTTACCGACTCTTACATGGATTGGGCCAAAGACAGTACAAGTTCCCTGTGGCAAAGACTGAAAAACAGATTGCCTACTCTTGGATCAGATTCAGATGAATAAACAGAACAGATATTGAGAAATTAATTCTGTATACCGATATTttgaaatgatcaaattaaatcATTCCTCCAATGTACGTATTCCACTAAACACAGTGCACAATGTAAAGTACacaatgtatgaatgaatatgtGTTATAATACGAATAAATTTC

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0042770 signal transduction in response to DNA damage biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0016233 telomere capping biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0030870 Mre11 complex cellular_component
GO:0005694 chromosome cellular_component
GO:0003678 DNA helicase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko04218 Cellular senescence
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-081022-25 Orthologous to human APOC4 (apolipoprotein C4).

Ensembl:

ensembl_id ENSDART00000115270

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019752 lncRNA upstream 13601 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019749 lncRNA upstream 27979 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019740 lncRNA upstream 60945 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00021929 lncRNA upstream 154326 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019712 lncRNA upstream 678866 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019763 lncRNA downstream 2262 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 7637 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019766 lncRNA downstream 7659 23984777 ~ 23991098 (+) False XLOC_009901
TCONS_00021930 lncRNA downstream 8136 23985254 ~ 23991098 (+) True XLOC_009901
TCONS_00021931 lncRNA downstream 41990 24019108 ~ 24028618 (+) False XLOC_009902
TCONS_00019756 mRNA upstream 2351 23972126 ~ 23973721 (+) True XLOC_009899
TCONS_00019755 mRNA upstream 2354 23972126 ~ 23973718 (+) False XLOC_009899
TCONS_00019750 mRNA upstream 12611 23960744 ~ 23963461 (+) False XLOC_009898
TCONS_00019754 mRNA upstream 12615 23961276 ~ 23963457 (+) True XLOC_009898
TCONS_00019753 mRNA upstream 13306 23960933 ~ 23962766 (+) False XLOC_009898
TCONS_00019761 mRNA downstream 1860 23978978 ~ 23980268 (+) False XLOC_009900
TCONS_00019762 mRNA downstream 1920 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019764 mRNA downstream 7061 23984179 ~ 23994642 (+) False XLOC_009901
TCONS_00019765 mRNA downstream 7637 23984755 ~ 23991161 (+) False XLOC_009901
TCONS_00019768 mRNA downstream 649330 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019751 other upstream 13143 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 121461 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 368720 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 576912 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2272393 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019767 other downstream 538974 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 904004 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 921053 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 928438 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 1118365 25095483 ~ 25096562 (+) False XLOC_009919

Expression Profile

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