RNA id: TU489908


Basic Information

Item Value
RNA id TU489908
length 411
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G426678
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14400544 ~ 14400954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGTGCCAAATACACTATTTCCGGTTTCGGAGAGTTTTTTTTGAGTGTGTCCTGTATGACGTCAAAAGACAGCGGAATTTCTTGTATAGACTTCTCCCTGATAAGTGTGCACACACACATCACCCAGAGCAAGAGCACACCTAGCCCATCAACGCGTTTCGTTCGGGATACGGAAGCCGAGAGATTTTCAACAATGGCTGTGTCCCAATTCAGGGGCTGCACCCTTTGAAGGCTGCATACATCAGCCTTGATTCTTTAGCTCCGCCCACGGCACTGATGGCAGGCACGCCTCCAGGAGCTCGGCTTTTTTCGGAAAGACTCGGTTTAGCGTATCTATCTTTTATAAATATGATAAAACTAAAGACTTTTTGGAGATATGAAGGATGCATTGTTACTCTAGATGTACTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489906 lncRNA upstream 1634 14398549 ~ 14398910 (+) True G426676
TU489905 lncRNA upstream 3925 14396383 ~ 14396619 (+) True G426675
TU489596 lncRNA upstream 96251 14303712 ~ 14303850 (+) True G426370
TU489605 lncRNA upstream 112322 14274477 ~ 14288222 (+) True G426379
TU489569 lncRNA upstream 159113 14235877 ~ 14241431 (+) True G426343
TU489909 lncRNA downstream 340 14401294 ~ 14401558 (+) True G426679
TU489910 lncRNA downstream 2573 14403527 ~ 14403744 (+) True G426680
TU489912 lncRNA downstream 11941 14412895 ~ 14413095 (+) True G426682
TU489913 lncRNA downstream 13416 14414370 ~ 14414631 (+) True G426683
TU489879 lncRNA downstream 18161 14419115 ~ 14531423 (+) True G426649
CI01000304_14356867_14373980.mRNA mRNA upstream 25878 14356586 ~ 14374666 (+) True CI01000304_14356867_14373980
CI01000304_14352375_14355516.mRNA mRNA upstream 45028 14352375 ~ 14355516 (+) True CI01000304_14352375_14355516
CI01000304_14331169_14331855.mRNA mRNA upstream 68571 14331064 ~ 14331973 (+) True CI01000304_14331169_14331855
CI01000304_14304022_14317252.mRNA mRNA upstream 82519 14304022 ~ 14318025 (+) False CI01000304_14304022_14317252
CI01000304_14231227_14261460.mRNA mRNA upstream 138381 14231073 ~ 14262163 (+) True CI01000304_14231227_14261460
CI01000304_14695603_14740389.mRNA mRNA downstream 294649 14695603 ~ 14741079 (+) True CI01000304_14695603_14740389
CI01000304_15034188_15038152.mRNA mRNA downstream 631263 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15040739_15045239.mRNA mRNA downstream 639598 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15047768_15063987.mRNA mRNA downstream 646814 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15140709_15147357.mRNA mRNA downstream 739607 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
TU489538 other upstream 69658 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 821697 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 1961458 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU490061 other downstream 547936 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 1484500 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 1682276 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 2103908 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 2354992 16755946 ~ 16761111 (+) True G428157

Expression Profile