RNA id: TU490974


Basic Information

Item Value
RNA id TU490974
length 269
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G427579
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14856975 ~ 14857243 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAGACCCTCGGCGACGAAACCGAGAGGAGAGGCGGCAGAGAATCTCAGCAGCTGAGGGGGAGAAATGGTGTTTACGACATAATCGCCGAGGAGCATGACTTATCTGTGGCACACGCTCGTGTTTGTGATGAGAGGACTGCTGGGATGTGCCAGCGTCTTCCCTGGAAGAGGCTTACGGAACACTCTAAGCTATGGAGGTGTCATTTCAGCACAGTGTGGTTTTTCACCAACACCAGAGCCATGAATACCAAACCAAACGGTTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490970 lncRNA downstream 12596 14844045 ~ 14844379 (-) True G427575
TU490969 lncRNA downstream 13175 14843577 ~ 14843800 (-) True G427574
TU490965 lncRNA downstream 113672 14742982 ~ 14743303 (-) True G427570
TU490829 lncRNA downstream 461151 14395544 ~ 14395824 (-) True G427434
TU490816 lncRNA downstream 492660 14364021 ~ 14364315 (-) True G427424
TU490978 lncRNA upstream 4157 14861400 ~ 14861868 (-) True G427583
TU490983 lncRNA upstream 58220 14915463 ~ 14915671 (-) True G427588
TU491029 lncRNA upstream 337033 15194276 ~ 15194659 (-) True G427631
TU491030 lncRNA upstream 346021 15203264 ~ 15203501 (-) True G427632
TU491060 lncRNA upstream 417973 15275216 ~ 15275669 (-) True G427657
CI01000304_14834446_14835469.mRNA mRNA downstream 21426 14834414 ~ 14835549 (-) True CI01000304_14834446_14835469
CI01000304_14753489_14803322.mRNA mRNA downstream 53653 14753489 ~ 14803322 (-) True CI01000304_14753489_14803322
CI01000304_14381274_14385770.mRNA mRNA downstream 471205 14380998 ~ 14385770 (-) True CI01000304_14381274_14385770
CI01000304_14377465_14379055.mRNA mRNA downstream 477920 14376532 ~ 14379055 (-) True CI01000304_14377465_14379055
CI01000304_14333374_14339329.mRNA mRNA downstream 516857 14333182 ~ 14340118 (-) True CI01000304_14333374_14339329
CI01000304_14949765_14955677.mRNA mRNA upstream 91944 14949187 ~ 14955677 (-) True CI01000304_14949765_14955677
CI01000304_14957226_14983228.mRNA mRNA upstream 99360 14956603 ~ 14983228 (-) True CI01000304_14957226_14983228
CI01000304_15075003_15110723.mRNA mRNA upstream 217058 15074301 ~ 15110996 (-) True CI01000304_15075003_15110723
CI01000304_15132805_15136196.mRNA mRNA upstream 274984 15132227 ~ 15136196 (-) True CI01000304_15132805_15136196
CI01000304_15322368_15331609.mRNA mRNA upstream 464547 15321790 ~ 15331739 (-) True CI01000304_15322368_15331609
TU490815 other downstream 495083 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 569371 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 587404 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 648676 14189468 ~ 14208299 (-) False G427309
TU490473 other downstream 906427 13931791 ~ 13950548 (-) False G427154
TU490768 other upstream 401721 15258964 ~ 15261405 (-) True G427376
TU492197 other upstream 1922121 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 1997322 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 3066620 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 3380476 18237719 ~ 18238319 (-) True G429499

Expression Profile