RNA id: TU490978



Basic Information


Item Value
RNA id TU490978
length 469
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G427583
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14861400 ~ 14861868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCATTATTTCTGTATAGTTTTATTTAATTTGCTATTTATTTTAAACACTCAAAAAATGTATGTAAACATGTAAATTTCACATAAGGCAATTTTTGCATTTGTTTCTACTCCAATTTGTTGTTGAAATATAATCATTTACACGGTGGCTGTCATAACCTGTTTTCATGACAGATTTATTTAAACATCACTAACAGGTTAAAGTCCCCCTGAAATCAAAATTTAAGTTTTTTAGCTTTTAGTATGAATATGTTAGCCTTAAGCTTATGAATAAGCTGGTGTGTTCCACAACAATGACAAAATTCGCATTTAGGAGATATAAGCATTCAAATCTTACAGTCTCTCACTTCCGCTAAAATGAATCACGGATTTTCACGACATTACATCACACTTCAGTTTCTCGTCAAATCTTCGGTCCAATTAAATGCTCTCTAGAATCTGAAGTCCCGCCTCCTCCTACACTCTTACAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU490974 lncRNA downstream 4157 14856975 ~ 14857243 (-) True G427579
TU490970 lncRNA downstream 17021 14844045 ~ 14844379 (-) True G427575
TU490969 lncRNA downstream 17600 14843577 ~ 14843800 (-) True G427574
TU490965 lncRNA downstream 118097 14742982 ~ 14743303 (-) True G427570
TU490829 lncRNA downstream 465576 14395544 ~ 14395824 (-) True G427434
TU490983 lncRNA upstream 53595 14915463 ~ 14915671 (-) True G427588
TU491029 lncRNA upstream 332408 15194276 ~ 15194659 (-) True G427631
TU491030 lncRNA upstream 341396 15203264 ~ 15203501 (-) True G427632
TU491060 lncRNA upstream 413348 15275216 ~ 15275669 (-) True G427657
TU491836 lncRNA upstream 604057 15465925 ~ 15466511 (-) True G428340
CI01000304_14834446_14835469.mRNA mRNA downstream 25851 14834414 ~ 14835549 (-) True CI01000304_14834446_14835469
CI01000304_14753489_14803322.mRNA mRNA downstream 58078 14753489 ~ 14803322 (-) True CI01000304_14753489_14803322
CI01000304_14381274_14385770.mRNA mRNA downstream 475630 14380998 ~ 14385770 (-) True CI01000304_14381274_14385770
CI01000304_14377465_14379055.mRNA mRNA downstream 482345 14376532 ~ 14379055 (-) True CI01000304_14377465_14379055
CI01000304_14333374_14339329.mRNA mRNA downstream 521282 14333182 ~ 14340118 (-) True CI01000304_14333374_14339329
CI01000304_14949765_14955677.mRNA mRNA upstream 87319 14949187 ~ 14955677 (-) True CI01000304_14949765_14955677
CI01000304_14957226_14983228.mRNA mRNA upstream 94735 14956603 ~ 14983228 (-) True CI01000304_14957226_14983228
CI01000304_15075003_15110723.mRNA mRNA upstream 212433 15074301 ~ 15110996 (-) True CI01000304_15075003_15110723
CI01000304_15132805_15136196.mRNA mRNA upstream 270359 15132227 ~ 15136196 (-) True CI01000304_15132805_15136196
CI01000304_15322368_15331609.mRNA mRNA upstream 459922 15321790 ~ 15331739 (-) True CI01000304_15322368_15331609
TU490815 other downstream 499508 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 573796 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 591829 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 653101 14189468 ~ 14208299 (-) False G427309
TU490473 other downstream 910852 13931791 ~ 13950548 (-) False G427154
TU490768 other upstream 397096 15258964 ~ 15261405 (-) True G427376
TU492197 other upstream 1917496 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 1992697 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 3061995 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 3375851 18237719 ~ 18238319 (-) True G429499

Expression Profile