RNA id: TU490041


Basic Information

Item Value
RNA id TU490041
length 224
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G426808
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 14885741 ~ 14885964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATAAACATCTTGGATGACATGGGGGGTGAGTAAATTATCATGAAATTTTGATTGGAAAGTGAACTAATCCTTTAATATGAGTGGATCCCTAAACAAAATGAAAGGTAAAAGAAAATTAGACCCATTAAAAATGGCGTATGGGTTTGTGTACAATCTGTATTCTGATAAAAAGTTAAGCTAAGATTACATTATAATATACAGTAATTACTGACAGAGATCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490040 lncRNA upstream 843 14884614 ~ 14884898 (+) True G426807
TU490039 lncRNA upstream 1463 14884075 ~ 14884278 (+) True G426806
TU490034 lncRNA upstream 7535 14878004 ~ 14878206 (+) True G426801
TU490033 lncRNA upstream 8392 14877070 ~ 14877349 (+) True G426800
TU490031 lncRNA upstream 11480 14873990 ~ 14874261 (+) True G426798
TU490042 lncRNA downstream 590 14886554 ~ 14886843 (+) True G426809
TU490046 lncRNA downstream 4240 14890204 ~ 14890447 (+) True G426813
TU490047 lncRNA downstream 5267 14891231 ~ 14891455 (+) True G426814
TU490058 lncRNA downstream 22164 14908128 ~ 14908496 (+) True G426825
TU490066 lncRNA downstream 44544 14930508 ~ 14930793 (+) True G426833
CI01000304_14695603_14740389.mRNA mRNA upstream 144662 14695603 ~ 14741079 (+) True CI01000304_14695603_14740389
CI01000304_14356867_14373980.mRNA mRNA upstream 511075 14356586 ~ 14374666 (+) True CI01000304_14356867_14373980
CI01000304_14352375_14355516.mRNA mRNA upstream 530225 14352375 ~ 14355516 (+) True CI01000304_14352375_14355516
CI01000304_14331169_14331855.mRNA mRNA upstream 553768 14331064 ~ 14331973 (+) True CI01000304_14331169_14331855
CI01000304_14304022_14317252.mRNA mRNA upstream 567716 14304022 ~ 14318025 (+) False CI01000304_14304022_14317252
CI01000304_15034188_15038152.mRNA mRNA downstream 146253 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15040739_15045239.mRNA mRNA downstream 154588 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15047768_15063987.mRNA mRNA downstream 161804 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15140709_15147357.mRNA mRNA downstream 254597 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15148523_15151340.mRNA mRNA downstream 261870 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
TU489538 other upstream 554855 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1306894 13556451 ~ 13573943 (+) True G426349
TU488854 other upstream 2446655 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU490061 other downstream 62926 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 999490 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 1197266 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1618898 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1869982 16755946 ~ 16761111 (+) True G428157

Expression Profile