Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU490061 |
| length | 1166 |
| RNA type | TUCP |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G426828 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 14948890 ~ 14950592 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU490087 | lncRNA | upstream | 5030 | 14943644 ~ 14943860 (+) | True | G426853 |
| TU490085 | lncRNA | upstream | 6676 | 14941924 ~ 14942214 (+) | True | G426851 |
| TU490067 | lncRNA | upstream | 16963 | 14931691 ~ 14931927 (+) | True | G426834 |
| TU490066 | lncRNA | upstream | 18097 | 14930508 ~ 14930793 (+) | True | G426833 |
| TU490058 | lncRNA | upstream | 40394 | 14908128 ~ 14908496 (+) | True | G426825 |
| TU490107 | lncRNA | downstream | 36912 | 14987504 ~ 14987531 (+) | True | G426863 |
| TU490174 | lncRNA | downstream | 199250 | 15149842 ~ 15150398 (+) | True | G426920 |
| TU490177 | lncRNA | downstream | 224687 | 15175279 ~ 15175635 (+) | True | G426923 |
| TU490182 | lncRNA | downstream | 243717 | 15194309 ~ 15194645 (+) | False | G426928 |
| TU490183 | lncRNA | downstream | 243717 | 15194309 ~ 15194689 (+) | True | G426928 |
| CI01000304_14695603_14740389.mRNA | mRNA | upstream | 207811 | 14695603 ~ 14741079 (+) | True | CI01000304_14695603_14740389 |
| CI01000304_14356867_14373980.mRNA | mRNA | upstream | 574224 | 14356586 ~ 14374666 (+) | True | CI01000304_14356867_14373980 |
| CI01000304_14352375_14355516.mRNA | mRNA | upstream | 593374 | 14352375 ~ 14355516 (+) | True | CI01000304_14352375_14355516 |
| CI01000304_14331169_14331855.mRNA | mRNA | upstream | 616917 | 14331064 ~ 14331973 (+) | True | CI01000304_14331169_14331855 |
| CI01000304_14304022_14317252.mRNA | mRNA | upstream | 630865 | 14304022 ~ 14318025 (+) | False | CI01000304_14304022_14317252 |
| CI01000304_15034188_15038152.mRNA | mRNA | downstream | 81625 | 15032217 ~ 15038498 (+) | False | CI01000304_15034188_15038152 |
| CI01000304_15040739_15045239.mRNA | mRNA | downstream | 89960 | 15040552 ~ 15045257 (+) | True | CI01000304_15040739_15045239 |
| CI01000304_15047768_15063987.mRNA | mRNA | downstream | 97176 | 15047768 ~ 15064170 (+) | True | CI01000304_15047768_15063987 |
| CI01000304_15140709_15147357.mRNA | mRNA | downstream | 189969 | 15140561 ~ 15147557 (+) | True | CI01000304_15140709_15147357 |
| CI01000304_15148523_15151340.mRNA | mRNA | downstream | 197242 | 15147834 ~ 15151395 (+) | True | CI01000304_15148523_15151340 |
| TU489538 | other | upstream | 618004 | 14330048 ~ 14330886 (+) | True | G426312 |
| TU489575 | other | upstream | 1370043 | 13556451 ~ 13573943 (+) | True | G426349 |
| TU488854 | other | upstream | 2509804 | 12434972 ~ 12439086 (+) | False | CI01000304_12437868_12439019 |
| TU488858 | other | upstream | 2509804 | 12436554 ~ 12436605 (+) | True | G425718 |
| TU488852 | other | upstream | 2509804 | 12437804 ~ 12439086 (+) | True | CI01000304_12437868_12439019 |
| TU491290 | other | downstream | 934862 | 15885454 ~ 15889591 (+) | True | G427860 |
| TU491458 | other | downstream | 1132638 | 16083230 ~ 16083714 (+) | True | G428017 |
| TU491561 | other | downstream | 1554270 | 16513714 ~ 16541045 (+) | True | G428096 |
| TU491635 | other | downstream | 1805354 | 16755946 ~ 16761111 (+) | True | G428157 |
| TU491628 | other | downstream | 2060138 | 17010730 ~ 17017194 (+) | False | CI01000304_17009769_17023302 |
