RNA id: TU490177


Basic Information

Item Value
RNA id TU490177
length 357
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G426923
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15175279 ~ 15175635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAATGTTTAAACTGAGAAAATTTATCATTTTAAGGGAAAAAATAAGTTGATTTTAAATTTCATGGCATCAACACATCTCAAAAAAGTTAGGACAAGGCCATGTTTACCACTGTGTGGCATCCCCTCTTCTTTTTATAACAGTCTGCAAACGTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGGGTGAAAGATCTGGACTGCAGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTATGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490174 lncRNA upstream 24881 15149842 ~ 15150398 (+) True G426920
TU490107 lncRNA upstream 142666 14987504 ~ 14987531 (+) True G426863
TU490087 lncRNA upstream 231419 14943644 ~ 14943860 (+) True G426853
TU490085 lncRNA upstream 233065 14941924 ~ 14942214 (+) True G426851
TU490067 lncRNA upstream 243352 14931691 ~ 14931927 (+) True G426834
TU490182 lncRNA downstream 18674 15194309 ~ 15194645 (+) False G426928
TU490183 lncRNA downstream 18674 15194309 ~ 15194689 (+) True G426928
TU490186 lncRNA downstream 24229 15199864 ~ 15200129 (+) True G426929
TU490187 lncRNA downstream 27014 15202649 ~ 15202986 (+) True G426930
TU490202 lncRNA downstream 45986 15221621 ~ 15222701 (+) True G426941
CI01000304_15148523_15151340.mRNA mRNA upstream 23884 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
CI01000304_15140709_15147357.mRNA mRNA upstream 27722 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15047768_15063987.mRNA mRNA upstream 111109 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15040739_15045239.mRNA mRNA upstream 130022 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15034188_15038152.mRNA mRNA upstream 136781 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15231039_15234179.mRNA mRNA downstream 55404 15231039 ~ 15234583 (+) True CI01000304_15231039_15234179
CI01000304_15265823_15269133.mRNA mRNA downstream 89333 15264968 ~ 15269591 (+) True CI01000304_15265823_15269133
CI01000304_15315146_15318470.mRNA mRNA downstream 139511 15315146 ~ 15319987 (+) True CI01000304_15315146_15318470
CI01000304_15348138_15379777.mRNA mRNA downstream 172323 15347958 ~ 15380003 (+) True CI01000304_15348138_15379777
CI01000304_15423818_15456305.mRNA mRNA downstream 245976 15421611 ~ 15456881 (+) True CI01000304_15423818_15456305
TU490061 other upstream 224687 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 844393 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1596432 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 2736193 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 709819 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 907595 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1329227 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1580311 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1835095 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile