RNA id: TU490187


Basic Information

Item Value
RNA id TU490187
length 338
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G426930
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15202649 ~ 15202986 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAGGTTATTGAACTGATAAATTGCCATATGTAGTTCTCTAACAGAGCTCATCATAAAGCATTATCTATTGTGAAGGGTCATTTCATTATGGTTATTGTTGTAGTGCTGTGCTGGTATTTATTTTCAAGGAAATACCATGTCTATTAATGGATATAGCTACAGTAATGTCTTCAGCTAGTCAGCTTGAGATCCTTTCCATTTAAACTGTTTATATCTCTTAAGCCTAGTAGTGAATGTTTTATGAGCAGTAGGATAACCATATTCATCCACAGGGAAGAGATGAAAGTATTGAATAAAGTTTTTTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490186 lncRNA upstream 2520 15199864 ~ 15200129 (+) True G426929
TU490183 lncRNA upstream 7960 15194309 ~ 15194689 (+) True G426928
TU490182 lncRNA upstream 8004 15194309 ~ 15194645 (+) False G426928
TU490177 lncRNA upstream 27014 15175279 ~ 15175635 (+) True G426923
TU490174 lncRNA upstream 52251 15149842 ~ 15150398 (+) True G426920
TU490202 lncRNA downstream 18635 15221621 ~ 15222701 (+) True G426941
TU490212 lncRNA downstream 50939 15253925 ~ 15255239 (+) True G426951
TU490192 lncRNA downstream 119030 15322016 ~ 15323585 (+) False G426933
TU490193 lncRNA downstream 119030 15322016 ~ 15333685 (+) False G426933
TU490190 lncRNA downstream 125440 15328426 ~ 15333685 (+) True G426933
CI01000304_15148523_15151340.mRNA mRNA upstream 51254 15147834 ~ 15151395 (+) True CI01000304_15148523_15151340
CI01000304_15140709_15147357.mRNA mRNA upstream 55092 15140561 ~ 15147557 (+) True CI01000304_15140709_15147357
CI01000304_15047768_15063987.mRNA mRNA upstream 138479 15047768 ~ 15064170 (+) True CI01000304_15047768_15063987
CI01000304_15040739_15045239.mRNA mRNA upstream 157392 15040552 ~ 15045257 (+) True CI01000304_15040739_15045239
CI01000304_15034188_15038152.mRNA mRNA upstream 164151 15032217 ~ 15038498 (+) False CI01000304_15034188_15038152
CI01000304_15231039_15234179.mRNA mRNA downstream 28053 15231039 ~ 15234583 (+) True CI01000304_15231039_15234179
CI01000304_15265823_15269133.mRNA mRNA downstream 61982 15264968 ~ 15269591 (+) True CI01000304_15265823_15269133
CI01000304_15315146_15318470.mRNA mRNA downstream 112160 15315146 ~ 15319987 (+) True CI01000304_15315146_15318470
CI01000304_15348138_15379777.mRNA mRNA downstream 144972 15347958 ~ 15380003 (+) True CI01000304_15348138_15379777
CI01000304_15423818_15456305.mRNA mRNA downstream 218625 15421611 ~ 15456881 (+) True CI01000304_15423818_15456305
TU490061 other upstream 252057 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 871763 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 1623802 13556451 ~ 13573943 (+) True G426349
TU488858 other upstream 2763563 12436554 ~ 12436605 (+) True G425718
TU491290 other downstream 682468 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 880244 16083230 ~ 16083714 (+) True G428017
TU491561 other downstream 1301876 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 1552960 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 1807744 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302

Expression Profile