RNA id: TU491925


Basic Information

Item Value
RNA id TU491925
length 3852
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G428411
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15800929 ~ 15806758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGAATAGAAGATTAAAGAAAAATGATCTACATTTTAATAGGAGTAAACATTTAAATATCTAAATACTGACCAGTAAATGTCCAACATTAGCCAATAATGAATTTTTTTTTTTTTTTTTGTTGATATATCATTCATCCCTAAAACCTAAAATAAATATATATAGTATAGTATTTGTAGTATATCTATATATAATATTATATCAAGGATACAGTAATATTATATTTTATGATAAAAAATAGTGTCAACTGAGTGGCGCAGTCTGTTAAGACACCTGCCCTTTCAGGTTGTGGGTTTGAATCCTGTTTGGCACATGAGGTACTGTGGCCAGAAATGTTGCAAAAAGTTGCATCTGTTCCAGACATTGATTCTTTCTAAGAATTATCTGATCTGAACTTATTAATTATAACATGCAGTGCAATTTTTGTCTTCACAGTGGCGCAACGAGGTGAGTGACAGGCACCTGACCCAGAGATTGTGGGTTCGAGTCTCATGGTACAACTTTATTGGGGCAGTTGTGGCCTAATGGTTAGAGAGTCAGGCTGGTATCGCGAAGGTTGCGGGTGCTGAGGGTGACTGAGGTGCCCTTGAGCAAGGTACCTAACCCCCAATCGCTGCCCGGCGCCACAGCAAAATGGCTGCCCACTGCTCTGGGTGTGCGTGTGCACAGTTTGCAGTGTGTGTGTTCACTACTCACTACTCCTAATGTGTGTACACTAAATGGATGGGTTAAATGCAGAGGAAAAATTCTGAGTATGGGTTACCATACTTTGCCTTAACGTCACTTTCACTTTCAATAAATGACTGATATTATGAATTTATACTACTTGGTTAATAAAAATATTAAAGTACACCAAAACTTAAAATATTTTAAGTGAATTTAGGCATCAGAATATAATGTACAGAATGAAAGATTTTATGCACAAACACACAAAGTTCTGCTATAGTCACTTGTGCACAGCAACTAATGCCAAAACATGCTCTTAAAGGGAAAGCAATCTTTAAAAGATTTTAAAGCTCTTAAAGGGTTAAACTTTTGTATGATAAGGTACACTATGTAACATTTTTTGTTCAAAATTAGTCAATACATCATCAATTCTTCTTCCAAAACTTGTTTCTGTCTTACTCTCATTCACTATAGTAAGCCTATTATAAGTGTGTATATTTTAGACCTGACAGGGTGGTTCTCAGGTGAAATTGTGTACATACGTCATATTTGTAAATAGAGAAAAGTTGCTCTGGCTAATTTGATTTGTGTATGGTGTGGAAGTGGCATAGTTTAGTTGTCACAATGAGCGAGAAAAGTTGACATGGTGAAGCACACTAAATCTCGAACCTCCAGAGAACCACCTTTTCTAAAAAAACACAGAATGGAGGAGGGTCTGCTGGCAAAAAGAGAATGCGACAGCTCGTAATAAAACAAGAATCAACATTGGCTTGGCTTTTCAAGGTGTACCTTTAAGTTAGTGCTATATGATGGCAAAATGGCAGAAACAATTAAATATTCTATATTGGTCAATAGCAATACATTCAAAATAAAAAAATAAGATAATATATGCAAGCTGCTGATACAGGTGCTTTTTTGTTTGTGATGGATGAACGAAAGCTTGTTGACAAGAAAAATCCAAGAAAACACACGTATTATAGCGCATTACACTAACCCCAATCCAGAAAGACATTTCAGTGGCAGATGTGAAATGACATGCACTTTTAAGTCAATATGAAACCAAATCTTATTTACTTTCTTCAAAAACATATGCCTGATCTTATAGAGTGCTGCAGCGATTATGTATTTTTGTAGGCCAACCCGGAAGTTAGCATCACACTAGTTACCTAAACAAAAACCCAATAAGATTTTTCTATAGGCTTTTGATTATTGCAAAAAAAATAAGTTTTGTGATCAACAAAAATTGATGATACACTTTCACTGTAAAGATTTGGAATAACTGTTCTTCTGCAGCTCCTGTAAGTTACGGGGTACCTCAGGGCTCTATTTTAGGGCCGTTGCTTTTTTTCTCTATACATGATTCCACTGGGCTCTATATTTAATAAATTAGGCATTTCATATCATAATTAAGCTGATTACATGCAGTTGTACCTGCCTTTCAAAGCAGGAAATAATGCAGCTGAAAATTCTTTGCTGTATTGCCTTGAGGAGGTGAAATGTTGGATGAACTCAAATTTTTTATTGTTAAATGATAAAAAGACTGAAATTTCATGTTGACTTTGAAACAAGTCCATGGTATCTTTTGTGTTCAAAATGCTTATAGCTTACAATTTTATGTACACAAAATAATTTAAACAAAATAAATTAATTGAATACTTCAATTCCGTTCATACAAAACATGTTCTTGCGCTATTTTTCATTTATATACACATGCAGATGGACATCTCTGGCACATTCGTACACTGTCTCCTTTGAGATAGAGCACCCTGATCTCTGAACAGTGAAAAAAAGACAAGACAATCTGGTCTTTGGCTCTCTCTTATCCACTCCTGACCTCCCAAGAGGCACATTTAGAGAAAAACGAAAAAGAGAGAAGACCTTAAGCCGAGTCCTAATTAATATCTGGCCCAGAAAACATCATTCACGGAAGTGCAAATAACGGATATGGATGCCAGTGGTGGTTTATAAGTAATGACTTGTGAATCCTTGAGGAGCATCTCTCTCCCTCTCTCTCTCTCTCTTATTGGCCACTGCTGTCAGCCTTGTTTGTCCCAGTGCAGTTCTAAATTTGTCCATATAGACTGTCGAAGCGGAGGCCAGTTCATTCTGCCGTCAGCTGAAATGAAAACAAGCTGAGGGGAGCCACACTCGCTTCTCTTAACTGTCAGGTCTGATCACAGTGGAGATGAACACACAGTCATAGAGGCCTAGGGGAGGCAATGAGCTGGATTGATTTATTGATCAAATATTCCTCACTGTGTTTTGTGGTTTCAGCTGCAAGCTATAACTCAGAAAATGAAATTCAATTACAGGGAATAGGAGAGCCGCAGGGGTTTAAAAACATTGCAAGGATCTGATGGTATTCTGAGCACTTCAGAGCATGCAAAGGACAAGTAAGGTACTCTACATACTTTGCTTGGCTAATGCATTTAACGTGATTCTTGCATTACTGATCAAAAAGTGTGCAACCATTTTGTTTTTGAACTATTTTAAACCTGACAGAGTCCTAAAATTGCTGATGTCAATCTGCAAACCTAGATAAATATTAGGGGTGTAATGGTTCAAATTACAATACTCATGGTTTGGTTTTTACAACGGTTTTAGGGTCACGGTTTCAGTATGGTTTGGTATGTGCTATGTTCAAGGAAAAAAAGAACTACTGTCAAATAAAATAAAGAAAATAAGAACAAATAATCAAACTACAAGCAACAGCACAAATAAATAAGTTTTTTTAGCGCTTTGAGTTTGAGAAAAGCTCAATATAAATAAAATGCATCATCATCAAACAATGCTTTTCAGGTTATTTAGGTATCTAACAGTAGTTTTCAGGTACAGAAATTGAATAAAGTAATCAAATGTAAAATAACATTGTAAATAATCTTCACTGTATAAATTAAATAAAGATTAATCATTATTAAAATTACAAAAGCTATTCCGTCAAGAGCAGTGAGTGATTTCCTTGTCTTTTGTTGTTTGATTAACATTAAAAACACAGACAGCAGGAATATTAGGCTGCTGTCCCTTTAAGACATAATGCACAGATTTAACATACTGATACTGTACACATGCGTTGTCTTTCTCGACTGCTTACGTTCACTTAAGACATACCAACCTACTATGTTTCCTAGGATACTTGCCAAGACGGGCATGTTGGCATAATTTTTGTGTGAATTTGTCCGCTCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491926 lncRNA downstream 45742 15754452 ~ 15755187 (-) True CI01000304_15755554_15770449
TU491966 lncRNA downstream 49386 15751343 ~ 15751543 (-) True G428451
TU491965 lncRNA downstream 50032 15749584 ~ 15750897 (-) True G428450
TU491946 lncRNA downstream 226896 15573732 ~ 15574033 (-) True G428432
TU491886 lncRNA downstream 284239 15516463 ~ 15516690 (-) True G428385
TU491919 lncRNA upstream 232720 16039478 ~ 16042713 (-) True G428405
TU492038 lncRNA upstream 315440 16122198 ~ 16122496 (-) True G428517
TU492040 lncRNA upstream 322956 16129714 ~ 16130055 (-) True G428519
TU492018 lncRNA upstream 325881 16132639 ~ 16137401 (-) True G428500
TU492042 lncRNA upstream 339558 16146316 ~ 16153240 (-) True G428521
CI01000304_15794739_15795184.mRNA mRNA downstream 4712 15794480 ~ 15796217 (-) True CI01000304_15794739_15795184
CI01000304_15782838_15784193.mRNA mRNA downstream 16736 15782727 ~ 15784193 (-) True CI01000304_15782838_15784193
CI01000304_15755554_15770449.mRNA mRNA downstream 30161 15754476 ~ 15770768 (-) False CI01000304_15755554_15770449
CI01000304_15715861_15722546.mRNA mRNA downstream 78383 15715424 ~ 15722546 (-) True CI01000304_15715861_15722546
CI01000304_15703390_15711806.mRNA mRNA downstream 88810 15703172 ~ 15712119 (-) True CI01000304_15703390_15711806
CI01000304_15859896_15879052.mRNA mRNA upstream 52359 15859117 ~ 15879376 (-) True CI01000304_15859896_15879052
CI01000304_15882316_15888812.mRNA mRNA upstream 74924 15881682 ~ 15888812 (-) True CI01000304_15882316_15888812
CI01000304_15891065_15894363.mRNA mRNA upstream 84045 15890803 ~ 15894363 (-) True CI01000304_15891065_15894363
CI01000304_15903075_15957836.mRNA mRNA upstream 96317 15903075 ~ 15957836 (-) True CI01000304_15903075_15957836
CI01000304_15986032_15996763.mRNA mRNA upstream 179005 15985763 ~ 15996763 (-) True CI01000304_15986032_15996763
TU490768 other downstream 539524 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1439037 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1513325 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1531358 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 1592630 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 972606 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 1047807 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 2117105 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2430961 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2779684 18586442 ~ 18591856 (-) False G429673

Expression Profile