RNA id: TCONS_00019745


Basic Information

Item Value
RNA id TCONS_00019745
length 970
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_009897
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23947196 ~ 23948538 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACACTTGTTCCTCAACAGGACAGCGTCAATTAAAGCTAAGCAGCACAGACTAGCGGCTTCAGTCAACATCATGAAGGTTCTTGTGGTCTTTGCACTTGCTGTATTTACAGGCTGCCAGGCCAATCTTTTCTATGCTGATGAGCCCAAACCTCAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCTAAAGCAACACAAACCGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTTGTCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGCCAGGACCTGATCAACGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCATATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGCGAGGAGCTGAGAGGAAACCTGGAGCAGAGCGTGAAGGAGCTGCAGGTTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTAGACCAGCATCTGCAGGAGTTCCAGAAGACCGTGACTCCCCTGACCGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATGGTCCAGCAGAGTCTTACACCCTACGCTGAAGACCTTAAAGAGAAGCTGGACCCCTATGCACAGAACCTGAAGGACCAGCTCGCTTCTCTGTACGAATCTTACACCAAGAGAAATTAAATGCTACCAACAGACTTTTGAAAACTGCTGCTATTGTAATTAGATCTTAGATAAAGTTCATCAAGAAAGTAGGTTTCTATGTGGTACATAgaatattactattactatctCCAGCTGACAATGTCCTGATG

Function

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3143 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in ball; extension; intestine; yolk; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDART00000103190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019740 lncRNA upstream 32069 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00021929 lncRNA upstream 125450 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019712 lncRNA upstream 649990 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 1071101 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 1250700 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019752 lncRNA downstream 12478 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 30949 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 36324 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019766 lncRNA downstream 36346 23984777 ~ 23991098 (+) False XLOC_009901
TCONS_00021930 lncRNA downstream 36823 23985254 ~ 23991098 (+) True XLOC_009901
TCONS_00019743 mRNA upstream 22351 23923746 ~ 23924845 (+) False XLOC_009896
TCONS_00019744 mRNA upstream 22579 23924040 ~ 23924617 (+) True XLOC_009896
TCONS_00019741 mRNA upstream 24328 23921610 ~ 23922868 (+) False XLOC_009895
TCONS_00019742 mRNA upstream 24455 23921777 ~ 23922741 (+) True XLOC_009895
TCONS_00019738 mRNA upstream 30933 23913943 ~ 23916263 (+) False XLOC_009894
TCONS_00019750 mRNA downstream 12313 23960744 ~ 23963461 (+) False XLOC_009898
TCONS_00019753 mRNA downstream 12502 23960933 ~ 23962766 (+) False XLOC_009898
TCONS_00019754 mRNA downstream 12845 23961276 ~ 23963457 (+) True XLOC_009898
TCONS_00019755 mRNA downstream 23695 23972126 ~ 23973718 (+) False XLOC_009899
TCONS_00019756 mRNA downstream 23695 23972126 ~ 23973721 (+) True XLOC_009899
TCONS_00019735 other upstream 92585 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 339844 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 548036 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2243517 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 3033712 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019751 other downstream 12440 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 567661 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 932691 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 949740 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 957125 24905556 ~ 24918957 (+) True XLOC_009913

Expression Profile

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