RNA id: TU492040


Basic Information

Item Value
RNA id TU492040
length 342
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G428519
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16129714 ~ 16130055 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATATTACAGCAAATGACTTGCTCCTAGCCCAAATTACTGCATCAGTGAAGTGTGGCATGGAAGTGATCAGCCTGTGGCACTGCTGAGGCACTATTGAGCCTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATCTTTCTCTTGAAAATATCCCATAGATTCAGGTCAGGCATATTGGCTGGCCAATAAAGCACAGTAATATCATGGTCAGCAAACCACTTGGAAGTGGTTTTTGCACTGTGGGCAGGTGCTAAAGTTCTGCTGGAAAAGGAAATCAGCATCTCCATAAAGCTTGTCAGCAGATGGAAGCATAAAGTGCTTCAAAATCTCCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492038 lncRNA downstream 7218 16122198 ~ 16122496 (-) True G428517
TU491919 lncRNA downstream 87001 16039478 ~ 16042713 (-) True G428405
TU491925 lncRNA downstream 322956 15800929 ~ 15806758 (-) True G428411
TU491926 lncRNA downstream 374527 15754452 ~ 15755187 (-) True CI01000304_15755554_15770449
TU491966 lncRNA downstream 378171 15751343 ~ 15751543 (-) True G428451
TU492018 lncRNA upstream 2584 16132639 ~ 16137401 (-) True G428500
TU492042 lncRNA upstream 16261 16146316 ~ 16153240 (-) True G428521
TU492059 lncRNA upstream 67762 16197817 ~ 16199521 (-) True G428533
TU492027 lncRNA upstream 79034 16209089 ~ 16216026 (-) True G428506
TU492030 lncRNA upstream 88468 16218523 ~ 16219892 (-) True G428509
CI01000304_16123390_16127834.mRNA mRNA downstream 1380 16123162 ~ 16128334 (-) True CI01000304_16123390_16127834
CI01000304_16077939_16106746.mRNA mRNA downstream 22731 16077492 ~ 16106983 (-) True CI01000304_16077939_16106746
CI01000304_16073177_16076377.mRNA mRNA downstream 53274 16073093 ~ 16076440 (-) True CI01000304_16073177_16076377
CI01000304_16067926_16072192.mRNA mRNA downstream 57522 16067887 ~ 16072192 (-) True CI01000304_16067926_16072192
CI01000304_16044458_16066649.mRNA mRNA downstream 63065 16044458 ~ 16066649 (-) True CI01000304_16044458_16066649
CI01000304_16202982_16207060.mRNA mRNA upstream 72765 16202820 ~ 16207117 (-) True CI01000304_16202982_16207060
CI01000304_16221131_16225319.mRNA mRNA upstream 90679 16220734 ~ 16225319 (-) True CI01000304_16221131_16225319
CI01000304_16232120_16237285.mRNA mRNA upstream 101494 16231549 ~ 16237285 (-) True CI01000304_16232120_16237285
CI01000304_16247523_16254506.mRNA mRNA upstream 116328 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16305853_16306849.mRNA mRNA upstream 175333 16305388 ~ 16306901 (-) True CI01000304_16305853_16306849
TU490768 other downstream 868309 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1767822 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1842110 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1860143 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 1921415 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 649309 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 724510 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1793808 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2107664 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2456387 18586442 ~ 18591856 (-) False G429673

Expression Profile