RNA id: TU492023


Basic Information

Item Value
RNA id TU492023
length 385
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G428502
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16220029 ~ 16220413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGAATCTGATTAGACCGTTAGCATCTCGCACAAAAATGACAAAAGAGTTTAGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACCAAGACCAACGGAAAATGAAAAGTTGCAATTTTCTAGGCCAATATGGCTAGGAACTATACTGTCATTCCAGCATAATAATCAAGGAACTTTGCTGCCGTACCATGGGTGCAGCAGGCGCAATGATATTACGCAGCGCCTGTGACCCCCTGTATGCACAGGGAGCGTGCCTTGCAACCATGGAGACATTTGTGAGAGACGCTGCGTAATATATCATCATAATATCCTCAAGTTTTAAATAGGAAAAATATCGAAACTCTTTGGTCATTTTTGATGCTAACGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492030 lncRNA downstream 137 16218523 ~ 16219892 (-) True G428509
TU492027 lncRNA downstream 4003 16209089 ~ 16216026 (-) True G428506
TU492059 lncRNA downstream 20508 16197817 ~ 16199521 (-) True G428533
TU492042 lncRNA downstream 66789 16146316 ~ 16153240 (-) True G428521
TU492018 lncRNA downstream 82628 16132639 ~ 16137401 (-) True G428500
TU492073 lncRNA upstream 59853 16280266 ~ 16280521 (-) True G428547
TU492167 lncRNA upstream 367062 16587475 ~ 16594509 (-) True G428638
TU492216 lncRNA upstream 383137 16603550 ~ 16604288 (-) False G428681
TU492217 lncRNA upstream 383137 16603550 ~ 16609014 (-) True G428681
TU492245 lncRNA upstream 591771 16812184 ~ 16812467 (-) True G428707
CI01000304_16202982_16207060.mRNA mRNA downstream 12912 16202820 ~ 16207117 (-) True CI01000304_16202982_16207060
CI01000304_16123390_16127834.mRNA mRNA downstream 91695 16123162 ~ 16128334 (-) True CI01000304_16123390_16127834
CI01000304_16077939_16106746.mRNA mRNA downstream 113046 16077492 ~ 16106983 (-) True CI01000304_16077939_16106746
CI01000304_16073177_16076377.mRNA mRNA downstream 143589 16073093 ~ 16076440 (-) True CI01000304_16073177_16076377
CI01000304_16067926_16072192.mRNA mRNA downstream 147837 16067887 ~ 16072192 (-) True CI01000304_16067926_16072192
CI01000304_16221131_16225319.mRNA mRNA upstream 321 16220734 ~ 16225319 (-) True CI01000304_16221131_16225319
CI01000304_16232120_16237285.mRNA mRNA upstream 11136 16231549 ~ 16237285 (-) True CI01000304_16232120_16237285
CI01000304_16247523_16254506.mRNA mRNA upstream 25970 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16305853_16306849.mRNA mRNA upstream 84975 16305388 ~ 16306901 (-) True CI01000304_16305853_16306849
CI01000304_16402321_16404006.mRNA mRNA upstream 181198 16401611 ~ 16404006 (-) True CI01000304_16402321_16404006
TU490768 other downstream 958624 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 1858137 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 1932425 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 1950458 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 2011730 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 558951 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 634152 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1703450 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 2017306 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 2366029 18586442 ~ 18591856 (-) False G429673

Expression Profile