RNA id: TU491296


Basic Information

Item Value
RNA id TU491296
length 379
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G427866
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16220030 ~ 16220408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCGTTAGCATCAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTTGAGGATATTATGATGATATATTACGCAGCGTCTCTCACAAATGTCTCCATGGTTGCAAGGCACGCTCCCTGTGCATACAGGGGGTCACAGGCGCTGCGTAATATCATTGCGCCTGCTGCACCCATGGTACGGCAGCAAAGTTCCTTGATTATTATGCTGGAATGACAGTATAGTTCCTAGCCATATTGGCCTAGAAAATTGCAACTTTTCATTTTCCGTTGGTCTTGGTACACGATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATCTAAACTCTTTTGTCATTTTTGTGCGAGATGCTAACGGTCTAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491298 lncRNA upstream 93 16218447 ~ 16219937 (+) True G427868
TU491468 lncRNA upstream 89950 16129707 ~ 16130080 (+) True G428027
TU491294 lncRNA upstream 122537 16091400 ~ 16097493 (+) True G427864
TU491461 lncRNA upstream 130858 16088069 ~ 16089172 (+) True G428020
TU491285 lncRNA upstream 151047 16067748 ~ 16068983 (+) True G427855
TU491522 lncRNA downstream 202339 16422747 ~ 16422949 (+) True G428069
TU491564 lncRNA downstream 254814 16475222 ~ 16555622 (+) True G428099
TU491583 lncRNA downstream 429484 16649892 ~ 16654939 (+) True G428116
TU491669 lncRNA downstream 511199 16731607 ~ 16731828 (+) True G428188
TU491678 lncRNA downstream 558955 16779363 ~ 16780995 (+) True G428197
CI01000304_16146512_16201457.mRNA mRNA upstream 17925 16146201 ~ 16202105 (+) True CI01000304_16146512_16201457
CI01000304_16138794_16144084.mRNA mRNA upstream 75793 16138794 ~ 16144237 (+) True CI01000304_16138794_16144084
CI01000304_16132778_16137222.mRNA mRNA upstream 82682 16131875 ~ 16137348 (+) True CI01000304_16132778_16137222
CI01000304_16109760_16122597.mRNA mRNA upstream 97156 16107378 ~ 16122874 (+) True CI01000304_16109760_16122597
CI01000304_16040037_16043960.mRNA mRNA upstream 176070 16040037 ~ 16043960 (+) True CI01000304_16040037_16043960
CI01000304_16228517_16231072.mRNA mRNA downstream 8109 16228517 ~ 16231553 (+) True CI01000304_16228517_16231072
CI01000304_16238051_16240914.mRNA mRNA downstream 17643 16238051 ~ 16241294 (+) True CI01000304_16238051_16240914
CI01000304_16255785_16257956.mRNA mRNA downstream 35377 16255785 ~ 16258152 (+) True CI01000304_16255785_16257956
CI01000304_16261912_16276701.mRNA mRNA downstream 41504 16261912 ~ 16277453 (+) True CI01000304_16261912_16276701
CI01000304_16315830_16336387.mRNA mRNA downstream 94760 16315168 ~ 16336928 (+) True CI01000304_16315830_16336387
TU491458 other upstream 136316 16083230 ~ 16083714 (+) True G428017
TU491290 other upstream 330439 15885454 ~ 15889591 (+) True G427860
TU490061 other upstream 1269438 14948890 ~ 14950592 (+) True G426828
TU489538 other upstream 1889144 14330048 ~ 14330886 (+) True G426312
TU489575 other upstream 2641183 13556451 ~ 13573943 (+) True G426349
TU491561 other downstream 284454 16513714 ~ 16541045 (+) True G428096
TU491635 other downstream 535538 16755946 ~ 16761111 (+) True G428157
TU491628 other downstream 790322 17010730 ~ 17017194 (+) False CI01000304_17009769_17023302
TU491773 other downstream 1094430 17314838 ~ 17314930 (+) True G428289
TU492630 other downstream 1461863 17682271 ~ 17684763 (+) True G429050

Expression Profile