RNA id: TU492167


Basic Information

Item Value
RNA id TU492167
length 701
lncRNA type antisense_over
GC content 0.51
exon number 5
gene id G428638
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16587475 ~ 16594509 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTGCATGAGCTGCAGGACCGTGCCCACTCTACGGATGGTGCTGTAGATGGTGGCAGTGCCAATGAATTCAGCTGACAGGTACGTGTAGAGGGAAAGCTGAACCTTAGCTGGTGTATGGATCCAGATGGCAGCATTAAACAAAACGTGATCACATAGCTGCTTCAGTAAAGGAGCTCCATGAGTCAAGCCATCCAGATACTTGGCAAAGGACAGAAACTGCTCCAAAACTGCCCTGGTGATGTGCATCCGTGAAGACTTCTCTAGCAAATAGCCAATGACCAGGAAGCCTTTTCCTCCCAACATCTGCTCCTGCATGGCTACTGAACTCTTCAACAAGTCCACTAGGAAAGCGAGAAGAGTGGCACAGACGGTCGTCTCCACAGGGCTGTCGTTGGGTTGCCTGTAGTCCAGCTGTGAGAAGAGTGGGAAAAGAACTTGGATTCCTCCAATAGAGTGGATGGCGCTATGGATGGAGTGAGTGACAATAGCCTTCACATCCTGCAGCATTAGGGCATGTGGAGAGTGCACAAATATAGAGGGGTTTTCTCTGGGCGAGGACTCCAGGCACAGCTGTGCGTCGGTGGCTTTAGCATTGTAGGTGAAGGCAATGCTGCTCGCCAACTTCCCATCATACAAAACCTGCTTATGGTGCTCAGCCAGGTGGATGTCGCTTTCTGACTTGAACTTAAATGTGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492073 lncRNA downstream 306954 16280266 ~ 16280521 (-) True G428547
TU492023 lncRNA downstream 367062 16220029 ~ 16220413 (-) True G428502
TU492030 lncRNA downstream 367583 16218523 ~ 16219892 (-) True G428509
TU492027 lncRNA downstream 371449 16209089 ~ 16216026 (-) True G428506
TU492059 lncRNA downstream 387954 16197817 ~ 16199521 (-) True G428533
TU492216 lncRNA upstream 9041 16603550 ~ 16604288 (-) False G428681
TU492217 lncRNA upstream 9041 16603550 ~ 16609014 (-) True G428681
TU492245 lncRNA upstream 217675 16812184 ~ 16812467 (-) True G428707
TU492248 lncRNA upstream 284560 16879069 ~ 16879279 (-) True G428710
TU492192 lncRNA upstream 291945 16886454 ~ 16886952 (-) False G428662
CI01000304_16451635_16453520.mRNA mRNA downstream 130918 16451377 ~ 16456557 (-) True CI01000304_16451635_16453520
CI01000304_16414561_16417605.mRNA mRNA downstream 169870 16414502 ~ 16417605 (-) True CI01000304_16414561_16417605
CI01000304_16402321_16404006.mRNA mRNA downstream 183469 16401611 ~ 16404006 (-) True CI01000304_16402321_16404006
CI01000304_16305853_16306849.mRNA mRNA downstream 280574 16305388 ~ 16306901 (-) True CI01000304_16305853_16306849
CI01000304_16247523_16254506.mRNA mRNA downstream 332969 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16651076_16668623.mRNA mRNA upstream 55357 16649866 ~ 16668915 (-) True CI01000304_16651076_16668623
CI01000304_16684166_16704849.mRNA mRNA upstream 89551 16684060 ~ 16706094 (-) True CI01000304_16684166_16704849
CI01000304_16711244_16719831.mRNA mRNA upstream 116735 16711244 ~ 16719831 (-) True CI01000304_16711244_16719831
CI01000304_16722727_16724691.mRNA mRNA upstream 128058 16722567 ~ 16724848 (-) True CI01000304_16722727_16724691
CI01000304_16746258_16751678.mRNA mRNA upstream 151194 16745703 ~ 16751678 (-) True CI01000304_16746258_16751678
TU490768 other downstream 1326070 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2225583 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2299871 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 2317904 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 2379176 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 184855 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 260056 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1329354 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1643210 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1991933 18586442 ~ 18591856 (-) False G429673

Expression Profile