RNA id: TU492216


Basic Information

Item Value
RNA id TU492216
length 345
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G428681
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16603550 ~ 16609014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAATGTTATAAAGGGAGGGCAGTTCAAACAAGAATTCATAGGGAAGGCAGTTCAAATAAGCACTTAGGTCCCTTGTGATGGGTTATGAGGCAAGAGGAAATGTGATTGATGCAGCTGTGACAGTCCAAATCTATTTCAGTTACATAACCAGACCATGCAAGAGCTGTTTGTCCCTGAGGCCTCACCGTATTCCATTCCTCTGGTCAAAGGCAGGGATCATGGAGGCGGGGTGCTCAGACATGAGTGCGACCAAGAGCTGTAGCACATCATGGATGTTTTCGTCCTCATGCATGGTTAGCAGGTAGTTTAATATGCTCTGCAACTCATCTTCCTTCACTCCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492167 lncRNA downstream 9041 16587475 ~ 16594509 (-) True G428638
TU492073 lncRNA downstream 323029 16280266 ~ 16280521 (-) True G428547
TU492023 lncRNA downstream 383137 16220029 ~ 16220413 (-) True G428502
TU492030 lncRNA downstream 383658 16218523 ~ 16219892 (-) True G428509
TU492027 lncRNA downstream 387524 16209089 ~ 16216026 (-) True G428506
TU492245 lncRNA upstream 207896 16812184 ~ 16812467 (-) True G428707
TU492248 lncRNA upstream 274781 16879069 ~ 16879279 (-) True G428710
TU492192 lncRNA upstream 282166 16886454 ~ 16886952 (-) False G428662
TU492193 lncRNA upstream 282166 16886454 ~ 16886952 (-) True G428662
TU492251 lncRNA upstream 310521 16914809 ~ 16916803 (-) True G428713
CI01000304_16451635_16453520.mRNA mRNA downstream 146993 16451377 ~ 16456557 (-) True CI01000304_16451635_16453520
CI01000304_16414561_16417605.mRNA mRNA downstream 185945 16414502 ~ 16417605 (-) True CI01000304_16414561_16417605
CI01000304_16402321_16404006.mRNA mRNA downstream 199544 16401611 ~ 16404006 (-) True CI01000304_16402321_16404006
CI01000304_16305853_16306849.mRNA mRNA downstream 296649 16305388 ~ 16306901 (-) True CI01000304_16305853_16306849
CI01000304_16247523_16254506.mRNA mRNA downstream 349044 16246383 ~ 16254506 (-) True CI01000304_16247523_16254506
CI01000304_16651076_16668623.mRNA mRNA upstream 45578 16649866 ~ 16668915 (-) True CI01000304_16651076_16668623
CI01000304_16684166_16704849.mRNA mRNA upstream 79772 16684060 ~ 16706094 (-) True CI01000304_16684166_16704849
CI01000304_16711244_16719831.mRNA mRNA upstream 106956 16711244 ~ 16719831 (-) True CI01000304_16711244_16719831
CI01000304_16722727_16724691.mRNA mRNA upstream 118279 16722567 ~ 16724848 (-) True CI01000304_16722727_16724691
CI01000304_16746258_16751678.mRNA mRNA upstream 141415 16745703 ~ 16751678 (-) True CI01000304_16746258_16751678
TU490768 other downstream 1342145 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2241658 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2315946 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 2333979 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490643 other downstream 2395251 14189468 ~ 14208299 (-) False G427309
TU492197 other upstream 175076 16780110 ~ 16780959 (-) True G428665
TU492202 other upstream 250277 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1319575 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1633431 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1982154 18586442 ~ 18591856 (-) False G429673

Expression Profile