RNA id: TU492245


Basic Information

Item Value
RNA id TU492245
length 284
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G428707
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16812184 ~ 16812467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTGTGACACACACCTCCATCCCCTCATTATCTTAAAAAGACAACGGCGTGCCACGATATGGAGCCTCTTCCACTTTTTCAACAAAACTGGTGGGACTCGTCTGGCAGGTTGCGGGATGATGGTGTTTTAAAGCCAGCGAGTCCGCGACAGGCTCGAACGTGCACGAACACACACGTGGACACGTACAAACATCATTCAGTCGATAGGAGAACAAGTGCTTGCGGAAAGCGGATGAATTCACTGATTTATTAGCTGGTGTCAGACATGTGCAGCACACACTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492217 lncRNA downstream 203170 16603550 ~ 16609014 (-) True G428681
TU492216 lncRNA downstream 207896 16603550 ~ 16604288 (-) False G428681
TU492167 lncRNA downstream 217675 16587475 ~ 16594509 (-) True G428638
TU492073 lncRNA downstream 531663 16280266 ~ 16280521 (-) True G428547
TU492023 lncRNA downstream 591771 16220029 ~ 16220413 (-) True G428502
TU492248 lncRNA upstream 66602 16879069 ~ 16879279 (-) True G428710
TU492192 lncRNA upstream 73987 16886454 ~ 16886952 (-) False G428662
TU492193 lncRNA upstream 73987 16886454 ~ 16886952 (-) True G428662
TU492251 lncRNA upstream 102342 16914809 ~ 16916803 (-) True G428713
TU492272 lncRNA upstream 138734 16951201 ~ 16955072 (-) True G428729
CI01000304_16783635_16804462.mRNA mRNA downstream 7722 16783536 ~ 16804462 (-) True CI01000304_16783635_16804462
CI01000304_16769537_16780398.mRNA mRNA downstream 31786 16769417 ~ 16780398 (-) False CI01000304_16769537_16780398
CI01000304_16765458_16765853.mRNA mRNA downstream 46331 16765139 ~ 16765853 (-) True CI01000304_16765458_16765853
CI01000304_16754929_16761111.mRNA mRNA downstream 51073 16754724 ~ 16761111 (-) True CI01000304_16754929_16761111
CI01000304_16746258_16751678.mRNA mRNA downstream 60506 16745703 ~ 16751678 (-) True CI01000304_16746258_16751678
CI01000304_16816039_16828777.mRNA mRNA upstream 2983 16815450 ~ 16829000 (-) True CI01000304_16816039_16828777
CI01000304_16838208_16848663.mRNA mRNA upstream 25280 16837747 ~ 16849079 (-) True CI01000304_16838208_16848663
CI01000304_16854877_16860888.mRNA mRNA upstream 42362 16854829 ~ 16860888 (-) False CI01000304_16854877_16860888
CI01000304_16868092_16872772.mRNA mRNA upstream 55415 16867882 ~ 16872772 (-) True CI01000304_16868092_16872772
CI01000304_16874485_16876468.mRNA mRNA upstream 61808 16874275 ~ 16876468 (-) True CI01000304_16874485_16876468
TU492197 other downstream 31225 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1550779 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2450292 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2524580 14283671 ~ 14286873 (-) True G427362
TU490767 other downstream 2542613 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU492202 other upstream 42098 16867107 ~ 16867238 (-) True G428668
TU492948 other upstream 1111396 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1425252 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1773975 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1776859 18589326 ~ 18591856 (-) True G429673

Expression Profile