RNA id: TU492248


Basic Information

Item Value
RNA id TU492248
length 211
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G428710
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16879069 ~ 16879279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAGATTGAATTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTAAATGCTTATGCCTACATATATAAATAAATATGAGATGATGGGTTGGCTCACATTAGACTGCATTCATCAGAGACATTGACAAGTGCATTCAGCTTCAGATCTTTAAGGATTTGAGGGTTTGTGGCCTGTCTATAATCACCCATGTAAAGCTGGCCTGGTAAGATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492245 lncRNA downstream 66602 16812184 ~ 16812467 (-) True G428707
TU492217 lncRNA downstream 270055 16603550 ~ 16609014 (-) True G428681
TU492216 lncRNA downstream 274781 16603550 ~ 16604288 (-) False G428681
TU492167 lncRNA downstream 284560 16587475 ~ 16594509 (-) True G428638
TU492073 lncRNA downstream 598548 16280266 ~ 16280521 (-) True G428547
TU492192 lncRNA upstream 7175 16886454 ~ 16886952 (-) False G428662
TU492193 lncRNA upstream 7175 16886454 ~ 16886952 (-) True G428662
TU492251 lncRNA upstream 35530 16914809 ~ 16916803 (-) True G428713
TU492272 lncRNA upstream 71922 16951201 ~ 16955072 (-) True G428729
TU492278 lncRNA upstream 81820 16961099 ~ 16961332 (-) True G428735
CI01000304_16874485_16876468.mRNA mRNA downstream 2601 16874275 ~ 16876468 (-) True CI01000304_16874485_16876468
CI01000304_16868092_16872772.mRNA mRNA downstream 6297 16867882 ~ 16872772 (-) True CI01000304_16868092_16872772
CI01000304_16854877_16860888.mRNA mRNA downstream 18181 16854829 ~ 16860888 (-) False CI01000304_16854877_16860888
CI01000304_16838208_16848663.mRNA mRNA downstream 29990 16837747 ~ 16849079 (-) True CI01000304_16838208_16848663
CI01000304_16816039_16828777.mRNA mRNA downstream 50069 16815450 ~ 16829000 (-) True CI01000304_16816039_16828777
CI01000304_16902774_16907628.mRNA mRNA upstream 22821 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_16929873_16945323.mRNA mRNA upstream 50169 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_17003708_17006278.mRNA mRNA upstream 124086 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_17026143_17041443.mRNA mRNA upstream 146787 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17067366_17070132.mRNA mRNA upstream 188051 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
TU492202 other downstream 11831 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 98110 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1617664 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2517177 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2591465 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 1044584 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1358440 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1707163 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1710047 18589326 ~ 18591856 (-) True G429673

Expression Profile