RNA id: TU492193


Basic Information

Item Value
RNA id TU492193
length 459
lncRNA type antisense_over
GC content 0.29
exon number 2
gene id G428662
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16886454 ~ 16886952 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATATTCTGATGTCATGACTTTCATTGACATATGGTGTGAAAAACGTCATAGCATTTTAGTTAATAAAATAAAAACAAAATAATAAATATTTATATTTTAGGTTTAAGGGAAAGACATTTCATCCATTATCCTGTGACACATTTACAAAAATCCTCACTTAGCAAGATTAAACCATAAACAGAAGAAACACTTATCTGACAACATTTAAGCAATAGTGTCATAAAAATGTTGTACATTATTAAATCAATAATCCCATACACAGACATTTAAAAAAACATTAATATAAAACATAAATTGCTTTGATAAAGAGTTCAGTGTCTTTGTGCCAGTCATTTATAAAGCTTTAGCTTTGTCCTGATCCATGTATTTGTGGTAAACAACACCAAGAGTAGTGAAGAAGTTTCCCATGAACAAAACAAGGAAAGTAGAGCCACACATAAGAACCTGAAAAGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492248 lncRNA downstream 7175 16879069 ~ 16879279 (-) True G428710
TU492245 lncRNA downstream 73987 16812184 ~ 16812467 (-) True G428707
TU492217 lncRNA downstream 277440 16603550 ~ 16609014 (-) True G428681
TU492216 lncRNA downstream 282166 16603550 ~ 16604288 (-) False G428681
TU492167 lncRNA downstream 291945 16587475 ~ 16594509 (-) True G428638
TU492251 lncRNA upstream 27857 16914809 ~ 16916803 (-) True G428713
TU492272 lncRNA upstream 64249 16951201 ~ 16955072 (-) True G428729
TU492278 lncRNA upstream 74147 16961099 ~ 16961332 (-) True G428735
TU492303 lncRNA upstream 123827 17010779 ~ 17012964 (-) True G428760
TU492263 lncRNA upstream 137116 17024068 ~ 17025288 (-) True G428721
CI01000304_16874485_16876468.mRNA mRNA downstream 9986 16874275 ~ 16876468 (-) True CI01000304_16874485_16876468
CI01000304_16868092_16872772.mRNA mRNA downstream 13682 16867882 ~ 16872772 (-) True CI01000304_16868092_16872772
CI01000304_16854877_16860888.mRNA mRNA downstream 25566 16854829 ~ 16860888 (-) False CI01000304_16854877_16860888
CI01000304_16838208_16848663.mRNA mRNA downstream 37375 16837747 ~ 16849079 (-) True CI01000304_16838208_16848663
CI01000304_16816039_16828777.mRNA mRNA downstream 57454 16815450 ~ 16829000 (-) True CI01000304_16816039_16828777
CI01000304_16902774_16907628.mRNA mRNA upstream 15148 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_16929873_16945323.mRNA mRNA upstream 42496 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_17003708_17006278.mRNA mRNA upstream 116413 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_17026143_17041443.mRNA mRNA upstream 139114 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17067366_17070132.mRNA mRNA upstream 180378 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
TU492202 other downstream 19216 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 105495 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1625049 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2524562 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2598850 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 1036911 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1350767 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1699490 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1702374 18589326 ~ 18591856 (-) True G429673

Expression Profile