RNA id: TU492263



Basic Information


Item Value
RNA id TU492263
length 1221
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G428721
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17024068 ~ 17025288 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGCCAAAATGTTTTTTATTAATTCTTAATTTATAATGCATACATTGAATACTTGGTAAATCGTAAAGTACAAACATTAAATTGAATTAGACATGGAAAATCTGTGCAAACTGTTCAGACTTCAGAAACATCTTCAAATATAACATGAACCAAACTGGCCTGCAGGGTAAGTACAAAAAAAGCTAAAAAAAATTGTACAAGTCTTTTTTTTTTTTTTTGGAAAGAATACAAATCAGAAAATGAAAATGGTCCTAGTTTGGTTTTCAAATTCCAGTATTATATTACATATTCATGAGCGAGTAAGTGATTGATTAGTGAGTTCTTTGATATTAAAATGATTATTTTTGGCATAATCACTGTCCTATAAAAATGTTTATAAAGACGACCATGTTCTTTTACAAATACCACATGACCTCCAGCAGATGTAGCAGCCTAATTATTTTTGATGTTGCTATGGTTATGTCAGCTCAAGTTCTGCAGAAATGCTATCTAGAGGTCATAATTATAGTGGTAAATCATTGCCCCTTTATCCAGGTCATTTTCATATTAACATGCAATAACATAAATAGAAAATTCTGAAAAACTATAATAAAAAAACAATATGCAACCTGTTCAGCACAACCAATTCAATGACTTCCATGAACATCAGCTCTGAAATGAGTTTCATGGACAAAGTATTAACACTCAAGCAGAGATATGCATGTATTTCAGTCACATAAGAGCTTCCTTATGAGGTCACGTTTCTCCAGGAATAAATGGAGACAGTGCATCTGTAAACAGATCTCGCTGAACTCCTCCTCCCACTTACAGAACAGCAGAAACAAAACTATACAAACAAAAAACTGTACACCAAGATTACACATTCACGTGGAGTAAAAACTTCAGCTGTCATCAAACTTAAATTAATGAAATTTTCTAGAATCCATTTTGCCACATTTGCTGCAGCTGGCAAAAGTTTAATGTCTTGGCCTGAGCTCTTTCTGTAATAAACAACTGAGCTGTTGTTTACACAACCTAGAAATGTTAAGTGTGCTTTAATGACACGATTCACACCATCTGCTGCAAAATCTAACCCTCAAACAAAGGCACAAAGCTGATAGTATAATGCTGATGGGCTTGAGGAATTTAAAGGAACAAAAAGAGTGAAAAATTAAAGAGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCCTCAAGTTGTTCCAAACCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU492303 lncRNA downstream 11104 17010779 ~ 17012964 (-) True G428760
TU492278 lncRNA downstream 62736 16961099 ~ 16961332 (-) True G428735
TU492272 lncRNA downstream 68996 16951201 ~ 16955072 (-) True G428729
TU492251 lncRNA downstream 107265 16914809 ~ 16916803 (-) True G428713
TU492192 lncRNA downstream 137116 16886454 ~ 16886952 (-) False G428662
TU492268 lncRNA upstream 29240 17054528 ~ 17056441 (-) True G428726
TU492266 lncRNA upstream 32697 17057985 ~ 17059153 (-) True G428724
TU492306 lncRNA upstream 36562 17061850 ~ 17062111 (-) True G428763
TU492351 lncRNA upstream 96304 17121592 ~ 17147286 (-) True G428807
TU492361 lncRNA upstream 110845 17136133 ~ 17136684 (-) True G428816
CI01000304_17003708_17006278.mRNA mRNA downstream 17685 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_16929873_16945323.mRNA mRNA downstream 77241 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_16902774_16907628.mRNA mRNA downstream 115249 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_16874485_16876468.mRNA mRNA downstream 147600 16874275 ~ 16876468 (-) True CI01000304_16874485_16876468
CI01000304_16868092_16872772.mRNA mRNA downstream 151296 16867882 ~ 16872772 (-) True CI01000304_16868092_16872772
CI01000304_17026143_17041443.mRNA mRNA upstream 778 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17067366_17070132.mRNA mRNA upstream 42042 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
CI01000304_17318429_17320775.mRNA mRNA upstream 293136 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17332233_17338077.mRNA mRNA upstream 306945 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17348461_17354382.mRNA mRNA upstream 322791 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
TU492202 other downstream 156830 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 243109 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1762663 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2662176 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2736464 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 898575 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1212431 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1561154 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1564038 18589326 ~ 18591856 (-) True G429673

Expression Profile