RNA id: TU492406


Basic Information

Item Value
RNA id TU492406
length 255
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G428859
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17219747 ~ 17220001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCCTATATAATGACTGTTGTCAAAGATTCATGAACTCTTTCCCTGATCTGCTATTGGTCAGACAATCAGATAGCCCCACCCCCAAACTCATGCCATTGGATGAGTCAGTGTTGCTGTTGTTGGGGTGGTTGTGATGCTCAAACACACAGCGCAGTGTTTTGATAGCACAGAGACACAGTGTTTATACTTTTCAGGGGAATCTACCCTTGATGTTGACACTGTTTACTGCAGTTTTGTTTTCAGAGTGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492384 lncRNA downstream 2946 17169331 ~ 17216801 (-) True G428837
TU492351 lncRNA downstream 72461 17121592 ~ 17147286 (-) True G428807
TU492361 lncRNA downstream 83063 17136133 ~ 17136684 (-) True G428816
TU492306 lncRNA downstream 157636 17061850 ~ 17062111 (-) True G428763
TU492266 lncRNA downstream 160594 17057985 ~ 17059153 (-) True G428724
TU492407 lncRNA upstream 5577 17225578 ~ 17225877 (-) True G428860
TU492410 lncRNA upstream 15441 17235442 ~ 17235696 (-) True G428863
TU492466 lncRNA upstream 96279 17316280 ~ 17316481 (-) True G428909
TU492471 lncRNA upstream 103212 17323213 ~ 17323555 (-) True G428912
TU492774 lncRNA upstream 124901 17344902 ~ 17360092 (-) True G429172
CI01000304_17067366_17070132.mRNA mRNA downstream 149615 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
CI01000304_17026143_17041443.mRNA mRNA downstream 178211 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17003708_17006278.mRNA mRNA downstream 213364 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_16929873_16945323.mRNA mRNA downstream 272920 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_16902774_16907628.mRNA mRNA downstream 310928 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_17318429_17320775.mRNA mRNA upstream 98423 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17332233_17338077.mRNA mRNA upstream 112232 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17348461_17354382.mRNA mRNA upstream 128078 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17369357_17411120.mRNA mRNA upstream 149153 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17413669_17414667.mRNA mRNA upstream 193513 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
TU492202 other downstream 352509 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 438788 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1958342 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2857855 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2932143 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 703862 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1017718 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1366441 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1369325 18589326 ~ 18591856 (-) True G429673

Expression Profile