RNA id: TU492407


Basic Information

Item Value
RNA id TU492407
length 300
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G428860
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17225578 ~ 17225877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAGATGACCTGAGAGGTCTGGATGGTTCATAACGTAGCAAAAGATCAGAAATGTACTTTCATGTGGTCACAACGCAAATCAGAAAAAAAAAGATTTCCTTTACCGGTCATTTTTTAAATGTCAGTCTTTGTCTGCAACTGTTAACCACCTTAAATTGTATTATATTTTAGGGTTTTAAAAAATTCCTTCATGTCAGAATTCAATATGAAGGGGGGTGGTCCGCTGCAGAAGGAGGCTTTTGAGAACACTGCATTGTTTTCGGTCATTAGAGGCATGTGTCTGCGTGCAAACATTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492406 lncRNA downstream 5577 17219747 ~ 17220001 (-) True G428859
TU492384 lncRNA downstream 8777 17169331 ~ 17216801 (-) True G428837
TU492351 lncRNA downstream 78292 17121592 ~ 17147286 (-) True G428807
TU492361 lncRNA downstream 88894 17136133 ~ 17136684 (-) True G428816
TU492306 lncRNA downstream 163467 17061850 ~ 17062111 (-) True G428763
TU492410 lncRNA upstream 9565 17235442 ~ 17235696 (-) True G428863
TU492466 lncRNA upstream 90403 17316280 ~ 17316481 (-) True G428909
TU492471 lncRNA upstream 97336 17323213 ~ 17323555 (-) True G428912
TU492774 lncRNA upstream 119025 17344902 ~ 17360092 (-) True G429172
TU492874 lncRNA upstream 297505 17523382 ~ 17523715 (-) True G429266
CI01000304_17067366_17070132.mRNA mRNA downstream 155446 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
CI01000304_17026143_17041443.mRNA mRNA downstream 184042 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17003708_17006278.mRNA mRNA downstream 219195 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_16929873_16945323.mRNA mRNA downstream 278751 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_16902774_16907628.mRNA mRNA downstream 316759 16902100 ~ 16908819 (-) True CI01000304_16902774_16907628
CI01000304_17318429_17320775.mRNA mRNA upstream 92547 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17332233_17338077.mRNA mRNA upstream 106356 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17348461_17354382.mRNA mRNA upstream 122202 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17369357_17411120.mRNA mRNA upstream 143277 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17413669_17414667.mRNA mRNA upstream 187637 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
TU492202 other downstream 358340 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 444619 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 1964173 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2863686 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 2937974 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 697986 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 1011842 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1360565 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1363449 18589326 ~ 18591856 (-) True G429673

Expression Profile