RNA id: TU492471


Basic Information

Item Value
RNA id TU492471
length 321
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G428912
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17323213 ~ 17323555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGGATCACCAATTCCCCCAATGCTGCGGCGAAAAATAGTGGAGCAATATCAGAAAGAAGTTTCTCAGAGAAAAATTGCAAAGAGTTTGAAGTTATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGTGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCGTGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492466 lncRNA downstream 6732 17316280 ~ 17316481 (-) True G428909
TU492410 lncRNA downstream 87517 17235442 ~ 17235696 (-) True G428863
TU492407 lncRNA downstream 97336 17225578 ~ 17225877 (-) True G428860
TU492406 lncRNA downstream 103212 17219747 ~ 17220001 (-) True G428859
TU492384 lncRNA downstream 106412 17169331 ~ 17216801 (-) True G428837
TU492774 lncRNA upstream 21347 17344902 ~ 17360092 (-) True G429172
TU492874 lncRNA upstream 199827 17523382 ~ 17523715 (-) True G429266
TU492823 lncRNA upstream 205763 17529318 ~ 17529711 (-) True G429216
TU492845 lncRNA upstream 240545 17564100 ~ 17564398 (-) True G429238
TU492827 lncRNA upstream 242147 17565702 ~ 17568817 (-) True G429220
CI01000304_17318429_17320775.mRNA mRNA downstream 2315 17318424 ~ 17320898 (-) True CI01000304_17318429_17320775
CI01000304_17067366_17070132.mRNA mRNA downstream 253081 17067330 ~ 17070132 (-) True CI01000304_17067366_17070132
CI01000304_17026143_17041443.mRNA mRNA downstream 281677 17026066 ~ 17041536 (-) True CI01000304_17026143_17041443
CI01000304_17003708_17006278.mRNA mRNA downstream 316830 17003365 ~ 17006383 (-) True CI01000304_17003708_17006278
CI01000304_16929873_16945323.mRNA mRNA downstream 376386 16929448 ~ 16946827 (-) True CI01000304_16929873_16945323
CI01000304_17332233_17338077.mRNA mRNA upstream 8678 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17348461_17354382.mRNA mRNA upstream 24524 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17369357_17411120.mRNA mRNA upstream 45599 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17413669_17414667.mRNA mRNA upstream 89959 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17488992_17490128.mRNA mRNA upstream 164569 17488124 ~ 17490494 (-) True CI01000304_17488992_17490128
TU492202 other downstream 455975 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 542254 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2061808 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 2961321 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3035609 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 600308 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 914164 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1262887 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1265771 18589326 ~ 18591856 (-) True G429673

Expression Profile