RNA id: TU492874


Basic Information

Item Value
RNA id TU492874
length 334
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G429266
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17523382 ~ 17523715 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAGAGACACTGATGTTATGCTGCATATTTTATTTAAAGGCAGTAATTGTGTAGTTACTGATGCAGTGATACAGTAGTTGCATTAACTTGATCATGTGCTGTTGTCAGCTAATGTCTTACTGCAAGAGATTTGCATTTTAAAGAAAAGGTTTCATAATAATCCAAGAAACACCTGTAAAGAACTTTTTTTTTTTTTTTTGTAAAACATTTAAGAAAAACTTGTTTTTGTTTTAACAGCCACTTTTGTTAGTCAATTTAGCTCTAATTTTCACTTAAATTTTTGACAAGGGCAGCAGGGACGTTCTGAGAACATTTCTAAATAAAGTATGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492774 lncRNA downstream 163290 17344902 ~ 17360092 (-) True G429172
TU492471 lncRNA downstream 199827 17323213 ~ 17323555 (-) True G428912
TU492466 lncRNA downstream 206901 17316280 ~ 17316481 (-) True G428909
TU492410 lncRNA downstream 287686 17235442 ~ 17235696 (-) True G428863
TU492407 lncRNA downstream 297505 17225578 ~ 17225877 (-) True G428860
TU492823 lncRNA upstream 5603 17529318 ~ 17529711 (-) True G429216
TU492845 lncRNA upstream 40385 17564100 ~ 17564398 (-) True G429238
TU492827 lncRNA upstream 41987 17565702 ~ 17568817 (-) True G429220
TU492809 lncRNA upstream 136159 17659874 ~ 17704143 (-) True G429202
TU492831 lncRNA upstream 195231 17718946 ~ 17794447 (-) True G429224
CI01000304_17488992_17490128.mRNA mRNA downstream 32888 17488124 ~ 17490494 (-) True CI01000304_17488992_17490128
CI01000304_17413669_17414667.mRNA mRNA downstream 108474 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17369357_17411120.mRNA mRNA downstream 112179 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17348461_17354382.mRNA mRNA downstream 168760 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17332233_17338077.mRNA mRNA downstream 185305 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17538160_17540583.mRNA mRNA upstream 14445 17538160 ~ 17540583 (-) True CI01000304_17538160_17540583
CI01000304_17571701_17576895.mRNA mRNA upstream 47509 17571224 ~ 17576895 (-) True CI01000304_17571701_17576895
CI01000304_17579139_17581078.mRNA mRNA upstream 55403 17579118 ~ 17581601 (-) True CI01000304_17579139_17581078
CI01000304_17582446_17582872.mRNA mRNA upstream 58529 17582244 ~ 17582872 (-) True CI01000304_17582446_17582872
CI01000304_17584110_17585466.mRNA mRNA upstream 60145 17583860 ~ 17585669 (-) True CI01000304_17584110_17585466
TU492202 other downstream 656144 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 742423 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2261977 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3161490 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3235778 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 400148 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 714004 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1062727 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1065611 18589326 ~ 18591856 (-) True G429673

Expression Profile