RNA id: TU492823


Basic Information

Item Value
RNA id TU492823
length 394
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G429216
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17529318 ~ 17529711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCTGATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492874 lncRNA downstream 5603 17523382 ~ 17523715 (-) True G429266
TU492774 lncRNA downstream 169226 17344902 ~ 17360092 (-) True G429172
TU492471 lncRNA downstream 205763 17323213 ~ 17323555 (-) True G428912
TU492466 lncRNA downstream 212837 17316280 ~ 17316481 (-) True G428909
TU492410 lncRNA downstream 293622 17235442 ~ 17235696 (-) True G428863
TU492845 lncRNA upstream 34389 17564100 ~ 17564398 (-) True G429238
TU492827 lncRNA upstream 35991 17565702 ~ 17568817 (-) True G429220
TU492809 lncRNA upstream 130163 17659874 ~ 17704143 (-) True G429202
TU492831 lncRNA upstream 189235 17718946 ~ 17794447 (-) True G429224
TU492915 lncRNA upstream 291049 17820760 ~ 17821223 (-) True G429300
CI01000304_17488992_17490128.mRNA mRNA downstream 38824 17488124 ~ 17490494 (-) True CI01000304_17488992_17490128
CI01000304_17413669_17414667.mRNA mRNA downstream 114410 17413514 ~ 17414908 (-) True CI01000304_17413669_17414667
CI01000304_17369357_17411120.mRNA mRNA downstream 118115 17369154 ~ 17411203 (-) True CI01000304_17369357_17411120
CI01000304_17348461_17354382.mRNA mRNA downstream 174696 17348079 ~ 17354622 (-) True CI01000304_17348461_17354382
CI01000304_17332233_17338077.mRNA mRNA downstream 191241 17332233 ~ 17338077 (-) True CI01000304_17332233_17338077
CI01000304_17538160_17540583.mRNA mRNA upstream 8449 17538160 ~ 17540583 (-) True CI01000304_17538160_17540583
CI01000304_17571701_17576895.mRNA mRNA upstream 41513 17571224 ~ 17576895 (-) True CI01000304_17571701_17576895
CI01000304_17579139_17581078.mRNA mRNA upstream 49407 17579118 ~ 17581601 (-) True CI01000304_17579139_17581078
CI01000304_17582446_17582872.mRNA mRNA upstream 52533 17582244 ~ 17582872 (-) True CI01000304_17582446_17582872
CI01000304_17584110_17585466.mRNA mRNA upstream 54149 17583860 ~ 17585669 (-) True CI01000304_17584110_17585466
TU492202 other downstream 662080 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 748359 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2267913 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3167426 14361448 ~ 14361892 (-) True G427423
TU490754 other downstream 3241714 14283671 ~ 14286873 (-) True G427362
TU492948 other upstream 394152 17923863 ~ 17924684 (-) True G429331
TU493132 other upstream 708008 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 1056731 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 1059615 18589326 ~ 18591856 (-) True G429673

Expression Profile