RNA id: TU493003


Basic Information

Item Value
RNA id TU493003
length 308
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G429382
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17978929 ~ 17979236 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAAAGAGCAGCTTGTTGCAGGCAGTGCGAGGCGCTGTGTGAGTAAAACTCAAAGAGATGCCGGAAACAGCATGGTCGATGCAGAACAGTGAACGCTCTCAGACACAGAGAAATTAGAAGCTGCCTCGAGACACAAAGCAAACCTTTGTGAAGAGCCCTGGAGCTCAAACCTCACAGTAAATGGACAGTTTCTCAAGAGTCTCCAGACCTAGTCATGGTATTCACAAGAATATGGACTGCTGGCAGCAAGCTGCTGGGTTCACAGTGTTTTTGACAGTTCATTTACTCACTGACAATTGAATGCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492937 lncRNA downstream 62812 17915911 ~ 17916117 (-) True G429322
TU492936 lncRNA downstream 63035 17915591 ~ 17915894 (-) True G429321
TU492931 lncRNA downstream 79034 17899666 ~ 17899895 (-) True G429316
TU492920 lncRNA downstream 150377 17828001 ~ 17828552 (-) True G429305
TU492918 lncRNA downstream 153265 17825442 ~ 17825664 (-) True G429303
TU493014 lncRNA upstream 16216 17995452 ~ 17997271 (-) True G429391
TU493002 lncRNA upstream 56251 18035487 ~ 18035987 (-) True G429381
TU493020 lncRNA upstream 253476 18232712 ~ 18234603 (-) True G429396
TU493158 lncRNA upstream 312268 18291504 ~ 18291749 (-) True G429525
TU493352 lncRNA upstream 352500 18331736 ~ 18332032 (-) True G429697
CI01000304_17837247_17882808.mRNA mRNA downstream 94969 17837247 ~ 17883960 (-) True CI01000304_17837247_17882808
CI01000304_17776984_17798369.mRNA mRNA downstream 180560 17776913 ~ 17798369 (-) True CI01000304_17776984_17798369
CI01000304_17761838_17774880.mRNA mRNA downstream 204049 17761550 ~ 17774880 (-) True CI01000304_17761838_17774880
CI01000304_17753888_17759116.mRNA mRNA downstream 219813 17753723 ~ 17759116 (-) True CI01000304_17753888_17759116
CI01000304_17748958_17752035.mRNA mRNA downstream 226894 17748386 ~ 17752035 (-) True CI01000304_17748958_17752035
CI01000304_18007357_18007779.mRNA mRNA upstream 27819 18007055 ~ 18008022 (-) True CI01000304_18007357_18007779
CI01000304_18010568_18011800.mRNA mRNA upstream 31018 18010254 ~ 18011834 (-) True CI01000304_18010568_18011800
CI01000304_18018841_18019759.mRNA mRNA upstream 39605 18018841 ~ 18020494 (-) True CI01000304_18018841_18019759
CI01000304_18021327_18022049.mRNA mRNA upstream 41815 18021051 ~ 18022109 (-) True CI01000304_18021327_18022049
CI01000304_18343532_18348936.mRNA mRNA upstream 364045 18343281 ~ 18349633 (-) False CI01000304_18343532_18348936
TU492948 other downstream 54245 17923863 ~ 17924684 (-) True G429331
TU492202 other downstream 1111691 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1197970 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 2717524 15258964 ~ 15261405 (-) True G427376
TU490815 other downstream 3617037 14361448 ~ 14361892 (-) True G427423
TU493132 other upstream 258483 18237719 ~ 18238319 (-) True G429499
TU493327 other upstream 607206 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 610090 18589326 ~ 18591856 (-) True G429673

Expression Profile