RNA id: TU493158


Basic Information

Item Value
RNA id TU493158
length 246
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G429525
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18291504 ~ 18291749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTGGCTCAAATCTGGCAAACAGGAGCAGTCCACCCAAATACCATCATTCCACGCCACATGTGGCCCAGATCATCATACCACGTGTGGCAGATGTAGGCCAGATTTGGGCCGGCACAAAGTTGCTATCTGGGATACACAAAGATTTTTGTTTTTATTTTTTTTTATATGGATCCCTTGAAGATCTACAATTTCACATATATATTGAATATGAATATATCAAATTATAATTGTTCAGAATGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493020 lncRNA downstream 56901 18232712 ~ 18234603 (-) True G429396
TU493002 lncRNA downstream 255517 18035487 ~ 18035987 (-) True G429381
TU493014 lncRNA downstream 294233 17995452 ~ 17997271 (-) True G429391
TU493003 lncRNA downstream 312268 17978929 ~ 17979236 (-) True G429382
TU492937 lncRNA downstream 375387 17915911 ~ 17916117 (-) True G429322
TU493352 lncRNA upstream 39987 18331736 ~ 18332032 (-) True G429697
TU493336 lncRNA upstream 55399 18349995 ~ 18357526 (-) True CI01000304_18356754_18371739
TU493332 lncRNA upstream 67334 18359083 ~ 18368584 (-) False CI01000304_18356754_18371739
TU493334 lncRNA upstream 77924 18405891 ~ 18406249 (-) True G429679
TU493341 lncRNA upstream 89206 18380955 ~ 18387866 (-) True G429686
CI01000304_18021327_18022049.mRNA mRNA downstream 269395 18021051 ~ 18022109 (-) True CI01000304_18021327_18022049
CI01000304_18018841_18019759.mRNA mRNA downstream 271010 18018841 ~ 18020494 (-) True CI01000304_18018841_18019759
CI01000304_18010568_18011800.mRNA mRNA downstream 279670 18010254 ~ 18011834 (-) True CI01000304_18010568_18011800
CI01000304_18007357_18007779.mRNA mRNA downstream 283482 18007055 ~ 18008022 (-) True CI01000304_18007357_18007779
CI01000304_17837247_17882808.mRNA mRNA downstream 407544 17837247 ~ 17883960 (-) True CI01000304_17837247_17882808
CI01000304_18343532_18348936.mRNA mRNA upstream 51532 18343281 ~ 18349633 (-) False CI01000304_18343532_18348936
CI01000304_18356754_18371739.mRNA mRNA upstream 64945 18356694 ~ 18373932 (-) False CI01000304_18356754_18371739
CI01000304_18419836_18444486.mRNA mRNA upstream 127325 18419074 ~ 18444486 (-) True CI01000304_18419836_18444486
CI01000304_18456463_18461381.mRNA mRNA upstream 164612 18456361 ~ 18461381 (-) True CI01000304_18456463_18461381
CI01000304_18481215_18483117.mRNA mRNA upstream 189375 18481124 ~ 18484668 (-) True CI01000304_18481215_18483117
TU493132 other downstream 53185 18237719 ~ 18238319 (-) True G429499
TU492948 other downstream 366820 17923863 ~ 17924684 (-) True G429331
TU492202 other downstream 1424266 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1510545 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 3030099 15258964 ~ 15261405 (-) True G427376
TU493327 other upstream 294693 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 297577 18589326 ~ 18591856 (-) True G429673

Expression Profile