Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019756 |
| length | 783 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_009899 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 23972126 ~ 23973721 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0034447 | very-low-density lipoprotein particle clearance | biological_process |
| GO:0006641 | triglyceride metabolic process | biological_process |
| GO:0010916 | negative regulation of very-low-density lipoprotein particle clearance | biological_process |
| GO:0042157 | lipoprotein metabolic process | biological_process |
| GO:0032375 | negative regulation of cholesterol transport | biological_process |
| GO:0050995 | negative regulation of lipid catabolic process | biological_process |
| GO:0051005 | negative regulation of lipoprotein lipase activity | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0034361 | very-low-density lipoprotein particle | cellular_component |
| GO:0034364 | high-density lipoprotein particle | cellular_component |
| GO:0005504 | fatty acid binding | molecular_function |
| GO:0004859 | phospholipase inhibitor activity | molecular_function |
| id | description |
|---|---|
| ko04979 | Cholesterol metabolism |
| id | description |
|---|---|
| ZDB-GENE-030131-1074 | Predicted to enable fatty acid binding activity and phospholipase inhibitor activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in extracellular region. Predicted to be part of high-density lipoprotein particle and very-low-density lipoprotein particle. Is expressed in DEL; blastoderm; and liver. Human ortholog(s) of this gene implicated in Alzheimer's disease and obesity. Orthologous to human APOC1 (apolipoprotein C1). |
| ensembl_id | ENSDART00000145330 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019752 | lncRNA | upstream | 9655 | 23960909 ~ 23962471 (+) | False | XLOC_009898 |
| TCONS_00019749 | lncRNA | upstream | 24033 | 23947289 ~ 23948093 (+) | True | XLOC_009897 |
| TCONS_00019740 | lncRNA | upstream | 56999 | 23914082 ~ 23915127 (+) | True | XLOC_009894 |
| TCONS_00021929 | lncRNA | upstream | 150380 | 23811601 ~ 23821746 (+) | False | XLOC_009891 |
| TCONS_00019712 | lncRNA | upstream | 674920 | 23294686 ~ 23297206 (+) | True | XLOC_009879 |
| TCONS_00019763 | lncRNA | downstream | 5659 | 23979380 ~ 23980174 (+) | True | XLOC_009900 |
| TCONS_00021711 | lncRNA | downstream | 11034 | 23984755 ~ 23991159 (+) | False | XLOC_009901 |
| TCONS_00019766 | lncRNA | downstream | 11056 | 23984777 ~ 23991098 (+) | False | XLOC_009901 |
| TCONS_00021930 | lncRNA | downstream | 11533 | 23985254 ~ 23991098 (+) | True | XLOC_009901 |
| TCONS_00021931 | lncRNA | downstream | 45387 | 24019108 ~ 24028618 (+) | False | XLOC_009902 |
| TCONS_00019750 | mRNA | upstream | 8665 | 23960744 ~ 23963461 (+) | False | XLOC_009898 |
| TCONS_00019754 | mRNA | upstream | 8669 | 23961276 ~ 23963457 (+) | True | XLOC_009898 |
| TCONS_00019753 | mRNA | upstream | 9360 | 23960933 ~ 23962766 (+) | False | XLOC_009898 |
| TCONS_00019748 | mRNA | upstream | 23588 | 23947213 ~ 23948538 (+) | False | XLOC_009897 |
| TCONS_00019745 | mRNA | upstream | 23695 | 23947196 ~ 23948431 (+) | False | XLOC_009897 |
| TCONS_00019757 | mRNA | downstream | 2209 | 23975930 ~ 23977128 (+) | False | XLOC_009892 |
| TCONS_00019758 | mRNA | downstream | 2277 | 23975998 ~ 23977128 (+) | False | XLOC_009892 |
| TCONS_00019759 | mRNA | downstream | 2351 | 23976072 ~ 23977118 (+) | False | XLOC_009892 |
| TCONS_00019760 | mRNA | downstream | 2506 | 23976227 ~ 23977525 (+) | True | XLOC_009892 |
| TCONS_00019761 | mRNA | downstream | 5257 | 23978978 ~ 23980268 (+) | False | XLOC_009900 |
| TCONS_00019751 | other | upstream | 9197 | 23960871 ~ 23962929 (+) | False | XLOC_009898 |
| TCONS_00019735 | other | upstream | 117515 | 23837920 ~ 23854611 (+) | False | XLOC_009892 |
| TCONS_00019728 | other | upstream | 364774 | 23607231 ~ 23607352 (+) | True | XLOC_009889 |
| TCONS_00019718 | other | upstream | 572966 | 23397801 ~ 23399160 (+) | False | XLOC_009882 |
| TCONS_00019682 | other | upstream | 2268447 | 21699006 ~ 21703679 (+) | False | XLOC_009863 |
| TCONS_00019767 | other | downstream | 542371 | 24516092 ~ 24517092 (+) | False | XLOC_009904 |
| TCONS_00019777 | other | downstream | 907401 | 24881122 ~ 24881218 (+) | True | XLOC_009911 |
| TCONS_00019779 | other | downstream | 924450 | 24898171 ~ 24898253 (+) | True | XLOC_009912 |
| TCONS_00019780 | other | downstream | 931835 | 24905556 ~ 24918957 (+) | True | XLOC_009913 |
| TCONS_00019788 | other | downstream | 1121762 | 25095483 ~ 25096562 (+) | False | XLOC_009919 |
