RNA id: TU493340


Basic Information

Item Value
RNA id TU493340
length 734
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G429685
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18539611 ~ 18540344 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAGTTTCAGTGCAGCTTCAAAGGGCTTTAAACAATACCAGACGCATTCCCTATTCTACTTACGGAAAAAATGTAACTGGCGCTGCGTTCGTTCCGTAAGTTGAATAGGGTAGGCGTAGGACATACAGCGTAAGCTTTTTGAAGAATACGAAAGTACGGTTTTGGCGGAAGCACTTGGAAGGCGATCATTTGTTTATATAAAGCATATACATTTAAATTTTTTTCGAAAATGACCGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCATTTGGAGGCCATTATAAGGAGAATAATCCTGGAATGTTTATCAAAAACCTTCATTTCTTTTTCGACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATTAGGAACATTTTATATGAAAGTGAACTAATCCTTGAACGGGAATCATTTTGACAACAATGTTGTGTCGTCTGTACGCAAAAAAATACCTTTTTTAAGTACATAGTTGTCGTGTAAACGTACCCTAAAACATAACAGGTTTTTTATTGTATATTAATGGGTAATACATTGGCCATATTCATTCATGAGCAGAACATTTGTGCAACGTTCATGCGGCCAGTAAGATTTAAAAAAAAATAAATTAATACTTTTACTCAGCAAAGATGCATTAAATTAAACAAACGTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493366 lncRNA downstream 12988 18526421 ~ 18526623 (-) True G429711
TU493365 lncRNA downstream 13283 18526081 ~ 18526328 (-) True G429710
TU493343 lncRNA downstream 63343 18465779 ~ 18476268 (-) True G429688
TU493360 lncRNA downstream 126515 18412884 ~ 18413096 (-) True G429705
TU493334 lncRNA downstream 133362 18405891 ~ 18406249 (-) True G429679
CI01000304_18481215_18483117.mRNA mRNA downstream 54943 18481124 ~ 18484668 (-) True CI01000304_18481215_18483117
CI01000304_18456463_18461381.mRNA mRNA downstream 78230 18456361 ~ 18461381 (-) True CI01000304_18456463_18461381
CI01000304_18419836_18444486.mRNA mRNA downstream 95125 18419074 ~ 18444486 (-) True CI01000304_18419836_18444486
CI01000304_18356754_18371739.mRNA mRNA downstream 165679 18356694 ~ 18373932 (-) False CI01000304_18356754_18371739
CI01000304_18343532_18348936.mRNA mRNA downstream 189978 18343281 ~ 18349633 (-) False CI01000304_18343532_18348936
CI01000304_18541563_18569559.mRNA mRNA upstream 934 18541278 ~ 18569559 (-) True CI01000304_18541563_18569559
TU493132 other downstream 301292 18237719 ~ 18238319 (-) True G429499
TU492948 other downstream 614927 17923863 ~ 17924684 (-) True G429331
TU492202 other downstream 1672373 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1758652 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 3278206 15258964 ~ 15261405 (-) True G427376
TU493327 other upstream 46098 18586442 ~ 18591856 (-) False G429673
TU493326 other upstream 48982 18589326 ~ 18591856 (-) True G429673

Expression Profile