RNA id: TU493326


Basic Information

Item Value
RNA id TU493326
length 2019
RNA type TUCP
GC content 0.46
exon number 3
gene id G429673
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18586442 ~ 18591856 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGACATTCTTCAAAATGTCTTCTTTTGTGTTCAACAGAAGAAATAAATTCACACAGGTTTGGAACAACTAAGGGTGTGTAAATGATGAAAGAATTTTCATTTTTGGGTGAACTATCCCTTTAACGTGGTACAGACATGGGCTCATATCACACGCTGTATAGTGCAGACGCAGTATTCAGTGCAGACACAAGTGTGCACTTCTGAGAGGAATGTTACAGCATGGAGTGGTAAAATTTTTAGGCACTTTGTGCAACAAAATCCACAGACTTTTTGGGAAATCAAACACTCGGCATAGTGAGTTATTCACTCAAGCCGTCGAAATGCAAATAAAGAAGAGTAACCCCTGAGCAAAAATGCTGTTCGTGTGGATCTAAAACAAATTTCATAGAGATCATACTTAATATAAGCATGCTGCGCTTCTCAGAAACCGATTCAGGTGTGAATTTACGATACTTTGTCTAGTACACTTGCGTTGTTTATAACATAAAACATTATGAGGCACCTAAAGATCAATTTTCAAAGTAAACGTAACGGATAGCACATGGTGGTCCACTGATCTAATGGAACGAACTCAGGTGTACCATTTACACACATCCACAGATCTGCTCACACACACACACACATTAACCACATACACTCACATTTAAATTAACAATCTACAATTCATCCCTCATTTTTTCACCCTTCGGTCGGACCAGCCTGCCCATGAAAAGAATGGAGTTTGTCTTGTTGTCCTTCACCAAGAAGATGAAGGGATGGTCAGCGTAGAAGAGTTTGGGGTTTTTGAGCTTGTCGGTACCAAAGATGCTCGTATCGGGTGGATTTCCCTCTGTGTCCCACTCCATGGCGGAGGCATGGAAGACATTGGACAGGTAGAGGTCTTTCTTCCCTGAGATGTTGGACAGATCTGCTTTGGTCTTGTCCACAGCTTCGGTCAGACCCAGCTCAGCAAGATGTTTCTGCGAGAACGCGTGGTGTTATATAAGTAACTGAATTTACAGGTGAGTTTATCACAAACACTTGCTGAAATTGCAGACTGTTCGTACCTGCAGGTTGTGGCTGACTTCCATGCTGACCTTTGGCAGCGACACCGCAACCGCCCTCTGTTCCATCTTACCGATCCAGGTGTTCAGTTGTTGACGTGTCAACAGTTTCTCCACTCTCTCCAGGGCTTCTACGTGGTACGGCATGATAAACACCACAGATGACATCTTATGCGCCAGCGGCATGTCCAGAATTAAAAGCTTGTTGGTTGTGTCGTCAAAGAAGCCATAAATGCCTGTGCGATGCATCATGGGTACAGAGACGGTGTAGGAGCGGTGCACTAAGAAACCACGATTGTCTACCATCTTGTGATGGAACTGCTCATCCCAGTGTGGTTTATAAAACATGGCGTTGATGATCATGGCTCCATCTGTCTTCTCTACATCTTTGGTCACCTCAGGCAGCTTTCCGTCGGTGGACTTCGATGCCCATTCGTTGATGGCTTTCACTGCGCTGCGCTTGTCACGGAAGTTTATTTTGGAGTGCTCGTAGTTATAATGCTTCTTGCTGCTCTTCAAAAAGTCGTCGACGAAGCTAACAGAGCTGGGCCCGTAGAAACGGTTGCTGATCTTCCAGGTGACGTTACGTGCCGTTGAGTTACTGACCTCATTGAGAAGTTCAGACAGCCCAGAGTGTAGCTGCTCATCCTTCACCGTAGTGGCACTCAGGACGGTTTTGACCTGAGAAGCAGTGTTGGATTTCCCTCCAAGAGCCACCAAACCCAGCGAGGAGGCCACTACCACGGGGGAGATCAAGATGTTCTCGACGTCCTTCTCCTTGGCCATGTTCTGGTACAGCTTGAAGGCAAAAGTGGCGCTGTTGTCTGCCAACATGGTGGCATGGCTGCTGAGGGTCTTGTCTGCACTCACAGTGGCGAATAGGCACAGAAGAACCACGCTTGACACCAACATGATTTTAGAGGTGGTAAGTTTACAGCCTGTAAGGGTAGCAAACAACTAGTCAATGAAGTTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493340 lncRNA downstream 48982 18539611 ~ 18540344 (-) True G429685
TU493366 lncRNA downstream 62703 18526421 ~ 18526623 (-) True G429711
TU493365 lncRNA downstream 62998 18526081 ~ 18526328 (-) True G429710
TU493343 lncRNA downstream 113058 18465779 ~ 18476268 (-) True G429688
TU493360 lncRNA downstream 176230 18412884 ~ 18413096 (-) True G429705
CI01000304_18541563_18569559.mRNA mRNA downstream 19767 18541278 ~ 18569559 (-) True CI01000304_18541563_18569559
CI01000304_18481215_18483117.mRNA mRNA downstream 104658 18481124 ~ 18484668 (-) True CI01000304_18481215_18483117
CI01000304_18456463_18461381.mRNA mRNA downstream 127945 18456361 ~ 18461381 (-) True CI01000304_18456463_18461381
CI01000304_18419836_18444486.mRNA mRNA downstream 144840 18419074 ~ 18444486 (-) True CI01000304_18419836_18444486
CI01000304_18356754_18371739.mRNA mRNA downstream 215394 18356694 ~ 18373932 (-) False CI01000304_18356754_18371739
TU493132 other downstream 351007 18237719 ~ 18238319 (-) True G429499
TU492948 other downstream 664642 17923863 ~ 17924684 (-) True G429331
TU492202 other downstream 1722088 16867107 ~ 16867238 (-) True G428668
TU492197 other downstream 1808367 16780110 ~ 16780959 (-) True G428665
TU490768 other downstream 3327921 15258964 ~ 15261405 (-) True G427376

Expression Profile