RNA id: TCONS_00021930


Basic Information

Item Value
RNA id TCONS_00021930
length 5845
lncRNA type sense_over
GC content 0.35
exon number 1
gene id XLOC_009901
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23984179 ~ 23994642 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatattttgccTTGTTTCAAAGGTCATACACTAAGAAGCAATAATGAAACTGAATGTAGCTCCTCATGAAGTGTGAAATTATGTATTTTGCTCTTTTTCGTTGCAAGGAATTCTGCTTTAGCTCATTTAGCTAGATGTTAGCTGGTTAACCAGCcacagtttcattcattcattcattcattcattcattcattcattcattcattcattggtgtTTGACCAACCTGTTTATTGAAAGCAGTTACAACATccattttaaagaaattaaaatgtaaaataaactaaactaaaataatatcCTAATTTTCTCACCATGTACTATACTTGGTTCAGACCTGTTTCTTTCTACCATTggacacaaaataatatattttgaagaatcttgGAAACCAGAAATCACTGACTTGCATATAAACCAGTGCTTAAtagtttcagcattcttcaatctatatatatatatatacttatatatattagTGTGGTTAACACTGTGGTTAACACTGCTAACAACGtgagtttgaatggcattttacatgacatttattgccatactaaaatcagcagcagacagttcacctcagatcttgaaataaaataaacaattgttaAACCGAGTATAATTTAACTTTAGATCTGTGACTCAAAAACTACACATAAGCTAGCCTATAAGCAATTTAGCATCTACATTTATTGTTAAAGAGAGTtgtattcattagattataaaccttaccattttgtgcgtgagtgcatattctgtgcttctgaatggctgtattaaaatttctgtcatgtttcgtctggtgcaaacagccaaattgcttatcactgcaaaccTTGCCACGTAGATTGTTGTTAGGACACAacgtaacctgctcacctaatgtttacgctcgtaCTGTTCGCATTATTAGATAACCTCATGTTACCAACCAACActaaatctgtgtctcattttggagtctgctactgtctacTAGAGGTAACATATTGGTCACagatgcatgctttgagagccttactgacggaatgaatgaaatatgctgttttccaccgAGGCAAcacagggtgctgaaatataattggctaaactggcatttggcgagttaaaagaaccaaaacaaatacaGCGTTCCAGCAAGTAatggacattttcaaagcagaatatctgacttttgcatagttttcagataaacaagtgtgtttatttagcatgtttcttaaatatctgcaaacatattatggtattgttatgctttaggacaggggtgtccaaactcagttctggagggccggtgtccagcaaatTTTAGTTCAAACCccaattaaacaaacctgatacagctaataaagctctttctaggtatactagaaactttcaggcaggtgttttgaaggaagttggagctaaattatgcaggacactggccctccaggactgagtttggacaccgctgTTTTGGGAGAATCAAAAACTTACATATGGCACCTTTAAGACCAACATACAATTCAGAGAGTCTGCATACAGTGAGTGTAATGCAACCATTATAATTCTGTACCATGTgtacagcaacaacaacatatGACAGAAGAACCCAAAAGTACAGAAGTTTATGTTGACAAGTGTATATGCAAGGGTAGGGTCTGACCCACCATTCTCAAGATACAAGGCAAATTTTAAAAGTGACCCCACTATCTACAATTTCACCTACCAAAATTTCGTCtagattaaaatattatatcaaCCATAAGTGTAAAAAACGCTTTTGTATTTGAATACATTAATCTGAAATCCTTTCTTGACATGCAAATTTGCACTGGCACAATGTTGCTTTAACTACAGACTCAAGCACAAGTTTCTATCAGAGAGTGACATTCACCCGTCTCCTGCTTTTGTTCCGATCACTTCAGAAAATGAGATTTTATACAGCAAATTGCAACATAACATGACATAAACTAAGATGATATGGATTCTAAAAACATCTAAACAACTCTGATGAACATCTCGAATTATTCATGaatttatatctaaaaaaaaaaacaaagcaaacaaaaggaaaattaaaattttttgtgACTCGTTATAATCaacttttatgattattattacctttaatgCTGTCTGAAATCACAGCGTGAGCCCCCTGGTGGCCATGAGGTCTTATGCAATCACTTACAGTATTACACTTGTTGGGTAGAGCCAGTACGGTGTCAGGGGATTGGATGAAAAATAACCTATCTAGTGTGTGCTTGTTGAGTGCCTCTATTTGTACCTAGCTATGTACAAATAGAGTATACTTTGAAGTGCTGTGTTCaactgtgcatttttttttttactttgggcTTTGAGTACTTTTTGTTTAtagtgataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttttttttttttaaatattgctttgATTACAgttatgggtcacactttattttgatggtctgtttgttaaatttaagttacattgcatctacatgccaactatttctcattagattataagtagactgttaggttggggttagtgtaggttgacatgtacttgcaaaatttcttatagtcagttaaatgtctgttgaaggagcagtatcagcagatattacccagacagtctaataatactcaaatggaccatcaaaataaagtgttacctaattaAGTCTGCACTATTTGCTAATTGGGCAATACAGTGAAGTGACTATGGCTGGATCCGAAATCACATCTACTTTCCTACTATTTCAACAGTAGGTAAAAGACAATAtgtgacaaaagaaaaaaagtagtttgaactcAAAAAGGAAGCAAAAAGAACCTCCATCTCTACACATCAGCTGCAGTACATCCATTTATATATACTTTTAGTGGTCGCATAGTTTAAGCTTATTAAAAATAGTCCCTACTTAAGAGAGTATGCGATTTGTAATGCAGCACATGTGATTTAGAATGAAGAAGGACTCATCTCTGATACATTTTTTCGGGTGTGCAGGAGCGGAGAGCTTTCGTGTTCCCAGGCAGGCTGAGGATGAGAAGGGAACCATCGCTGTTGTGGTCGACACCCTGAAATCCTACTATGACCAGAGTGTGGACACTGCCAGTGGATATGTAGAGACCATCAAGGGCTACAAGCTGGAAGAGAAAGCCAAGTAAGTCTAATTGTATATGTTGGTGgtaaaacaaaattgtcacttgtttttttttcaaataaaaaaataattagaaaatgcATATGTAATAGgataaaatatgtacaaaaaatataacatttacaaAAAGCAGAACAAAGCAACAAAGCAGACAAAGCAACAAAGCAGATAAAAGCAGCATTAAATGGCTGACACAAGAACTGGATTATCTGAAACACCAAGAAAGATATCAGTAATTCAGCCACAAAGCAGTCAACattagctggcagctagctctctgcaactcttacatggttgcccactgaagctaagcagagctgtgcCTGGTCAGACCTGGATGGTAGACCACATAATGCCTGaattggtgttagtgaggcccgaagggggtgcttaacctgcagtctgtgtgggtcctaacaccccagtaaattgatggggactctatgcTGCTCAGTGAGTGCTAACTTTTGAATGAGACTTTAAACCGAGgtactgactctctgtggtcattaaaaatcccaggatgtccttcaaacaAAAAAGCAGGGGTTTAACTCTGGCATGTCCTGGATTCTGTCCATCATGGtcttctaaccatccccatattataattggcttcgTCACTCTGTCTTCTCACCACCAATCAGCAGGTGGAATGCGCTTGGTAAAGGATGAGGAGATTTCTGCCATTGTGTAAAGAGCTTTGAGTGTCAAGAAAAGAGCTAAAaggaattatcattattattaacaatagagAGGGAAAATATCAAAACACttgacaaaaaataacaaaaataaaagcaggcAATGACTGAAACTGCTGGGTAGTTTCAATATGGATGAATCTAAATCAaccattgttgttttgttttaacctAATGGCAGGGTTTGTCTAAATTTGAATTTGAAATCAACTCTTAAAAAGAAACTTACTATACAGGTCTTATTTTACTGTCACCAGGTGGAAATATTCAGCTTAttctaaaaattgtatttatatgtaatctcaaaaataaaataaaaagaaaaaaatgaaaaatgtgagTGTCAAATATTTCTTTCAGCAACACTTCTGGGTAGGGGTTGCACCAGATGGAGTGTAAAGTCTTCAATAGGGGCttagtaactactagctagtttgtaaataaatttgttctTACTCCAGTTGCAACACATGTTTTTAACACAAATCGTAGTTAGTAGGTCATAAGCCAAGTCATGTGTAGTCGCATTggatgatataatatatatatatatatatataaaaacatttacattgttaaactgctttaaaataatGCATCTACATATAACTGTTCTATGAAAATGAAATACAGATTACATTTTTATACTACATTAAATTACAGTCAGACACTAATAACAGACGACGCACACACCCACATCGCAAACCGTGAATACACAAAGTTATCAAGCATACTTGATTTTTTCTTAAATATCCTACATATGAAAGAGAAAAGAGCACGGAGAAAAACTCAGCCATAAAGAAATTCTCATTCTTCAATATAATCGCGAGCTCCTCAATGTAAACTAAACTCCGTTAAAATACGTATAAATACCGTTATACATGGGGGAGGCTGCCATTAATGTTTAGTTGGAACCAGTGGTGTAGTATGCACATCTACTCTTCATGCCTACTTTTTTCCATGAGCTGTTTGGATATTACGACTTCTGATGATAAATGATTATGTATACCCTCTGTATACTCACTTGTTCTGCTGATTAAACTTCCTTAATTTTACGTTTTTGTGTACCCTTTAAATGTataccaaatatttttttaactcgCATCTTAATTTTTTGCAATTTGTGCATTTGCAAAATTTTACTTGActattgtcattatttactcaacctttacttgtttcaaaccggtTTGTCTGTttctcttctgttgaacgcaaaagaagatatttcaaagaaagtTGGaatcctgtaaccactgacttccatactattagttttttttttttctgtggaagtcaatagttacaggtaactgatgttaaataaatatatattgctaatgaatcaaaaaaaataaaaataaaaaattgacttTCGTTGTTTCCCATTACAACACATGGCCAGTAATGACATTTTGATGTTCTTAAACATGACTCCTCTGACTTTATGCCTTTCCTCCCTCAAGAACAATCTATAGCGATACAGTCCGTGCTGTGGGCACCTACGCCGGCATCTTTCAAGACCAGCTGTACCACATTTTGTACTCTCAAGATAGCCATTAAGTCATATAAAACAACACCTGAACACAACTCCATCTCTTTCCGGTCCCAAGTCTACCCCCACACTGGATGCACAAATATACACATCCCGCAAGAAGACAGCGCGGTCTGGGATAAACACATGAGTGGCGAACTCTTGTCTTCAACTGGCCTGTTACCTTTGCCTATTCTGCAAAAGCACCTTGACACACATCAGTAAATAAGTATGTAAAAATTCTAGGTTAAGCCATGTCTAATGCTCAAACACAAGCTGTTATTGGATGAAGATCAGATGCCCGTGCTGCTGGCTGATAACCTGCACCCAGGTTAAAGCAGAATCCTTGACTGTTTCATTGAAGTTTGCTTTATAGATTAAATAAATCCTTGTATTATATCAGC

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0042159 lipoprotein catabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0042953 lipoprotein transport biological_process
GO:0042627 chylomicron cellular_component
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko04979 Cholesterol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019763 lncRNA upstream 5080 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00019752 lncRNA upstream 22783 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019749 lncRNA upstream 37161 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019740 lncRNA upstream 70127 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00021929 lncRNA upstream 163508 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00021931 lncRNA downstream 28010 24019108 ~ 24028618 (+) False XLOC_009902
TCONS_00021932 lncRNA downstream 28167 24019265 ~ 24028618 (+) True XLOC_009902
TCONS_00021712 lncRNA downstream 207381 24198479 ~ 24207903 (+) False XLOC_009903
TCONS_00021713 lncRNA downstream 210335 24201433 ~ 24207903 (+) True XLOC_009903
TCONS_00021933 lncRNA downstream 524994 24516092 ~ 24524076 (+) True XLOC_009904
TCONS_00019762 mRNA upstream 4900 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019761 mRNA upstream 4986 23978978 ~ 23980268 (+) False XLOC_009900
TCONS_00019760 mRNA upstream 7729 23976227 ~ 23977525 (+) True XLOC_009892
TCONS_00019758 mRNA upstream 8126 23975998 ~ 23977128 (+) False XLOC_009892
TCONS_00019768 mRNA downstream 635350 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019769 mRNA downstream 640998 24632096 ~ 24645570 (+) True XLOC_009906
TCONS_00019770 mRNA downstream 690079 24681177 ~ 24695891 (+) False XLOC_009907
TCONS_00019771 mRNA downstream 690128 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019772 mRNA downstream 693009 24684107 ~ 24695887 (+) True XLOC_009907
TCONS_00019751 other upstream 22325 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 130643 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 377902 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 586094 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2281575 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019767 other downstream 524994 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 890024 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 907073 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 914458 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 1104385 25095483 ~ 25096562 (+) False XLOC_009919

Expression Profile

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