RNA id: TU493796


Basic Information

Item Value
RNA id TU493796
length 92
lncRNA type read_through
GC content 0.38
exon number 1
gene id G430036
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 25238 ~ 69472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAGAAACCAAACAGAGAAACTGAGAAATGCAGAAAAGCAAAAATTCCAGAGTTTTCAAGTCAGAAAACAGATTTCAAGTGTTTGAGTCGTTACACACAGTGACACACACTGCATTAAATGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTTTTTGTAACATATCAGGACACAAATTTGTATAATGATATAGGTATGACATAGGTATTACAAGGAGAGGGTGACTTATGAGGACATTACCCCATGTCCCCATTTTTCAAAAGGGTTATAAATCATACAGAATGAGTTTTTGTGAGAAAGTAAAAATGTGCACAGTTTCCTGTGATGGGTAGGGGTAGTGTAGGGGGATAGAAAATACGGTTTGTACAGTATAAAAACCATTACGTCTATGGAATGTCCCCACAATTCACAAAAACAAACGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494013 lncRNA downstream 85591 155063 ~ 166375 (+) True G430245
TU494041 lncRNA downstream 142650 212122 ~ 212353 (+) True G430268
TU494042 lncRNA downstream 143860 213332 ~ 213645 (+) True G430269
TU494043 lncRNA downstream 144589 214061 ~ 214314 (+) True G430270
TU494044 lncRNA downstream 148117 217589 ~ 217842 (+) True G430271
CI01000306_00107710_00118177.mRNA mRNA downstream 37265 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00135679_00139917.mRNA mRNA downstream 66028 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00235686_00242814.mRNA mRNA downstream 165975 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 175669 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 210186 279658 ~ 285494 (+) True CI01000306_00279658_00285330
TU494062 other downstream 166142 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 167439 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 856072 925544 ~ 999902 (+) True G430409
TU494250 other downstream 1081125 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 1140261 1218095 ~ 1218557 (+) True G430124

Expression Profile