RNA id: CI01000306_00107710_00118177.mRNA


Basic Information

Item Value
RNA id CI01000306_00107710_00118177.mRNA
length 2374
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000306_00107710_00118177
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 106737 ~ 118960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAGAGAGAGGGAGGAATATCACTAAAGAAGTACAAGAAAGAGAAAGAAACAGGAGAAAGTTGAGTTCATAACTTTACACACGAGGGCCAGTAACTGCTGACACAGTCACACCATCATTAAACCCGGAGAGCCGTTCTGGTCCGGTCTGGATCCAGCGCTCTCACTTTTGTCAGCATCTCTATGAATTATTGAAACCGCCGACAGGCAGACAGTGAGAGAGAGACACTTCAACATCTGACTATTTCTGATTTAACCCTCGCTGAAACACAAACCCACAAGACACTCGACATAATGACACACTTCTGAGAGTTAAGATGCTTTAAAGTACTGGATCCAAACATCAGGACAAATACATCAGAACCGAACAGAACTAAACCGTCTTCAACTGCTCTGACGGAAGCCACAGGAGACATCAACACTAACGTGATCATACAGGTGGCCCCAAAAACCTTTTGGACACTTCAGTCACAGTTTAAATGTCTGAAATCATTAGATATAAAACATCAAGCAAGTGTCCGCTGTGCTCAGATGATGCTGGAGCTGTTCTCAGAACTAACTTCATTTTAACTGGCTGTTCTCAAGCACGAATCCGTCTGTAGAGCGATCAGATGACTGCCATCAGCGGCGTCGCTAACAACGATAATTATCATATATGCAGTTAAACTGTCCATCCATATATCAATCATTTCACTGGATGTAATATTGTCGGCATGGTTTAATGCATTAGCTTTAGCAGCTTTCATGTTTGAACAGAAAAGAGCTGCTAGCATTTGCCTTGACTGAAATCTTCCGTTCAGTGTTTGATGGGAAACTGGGTCACTTACAGTCACAATGATTCAGCACAACACAGAAGCACTCGAGCGTCAGGGCTCAATGTCGCTCGCAATCTCATCTTTAATAGAGTTTCTCGTGGCGGCTTCAGCGTCTCTGGCGCGGGAGGAGAAAGCAGACACTTTAGCAGCGCTTCATGTGTGATGAGAAACAGTCTTTCATCATCACCTGTTTAACATTTGAGACTCGACCCGAATCACACACCGAGGGTCCCGATGTCCCACTCAAACCCACACCAGAAGAGGAGAGAGCGAAACATATGATTCACATATCTCCTCATCGTCTCCGATCAGCTCCCGGAGACACCGGCTCATCCGCTCACGCTGTCGTCTCTCAGGGACGTTATCGGAGTCGAGTTCGTCTTATCGGCCTGCGGAAACGCATCACTGGCACAGGAAGTGATGGCACTCATCCTCGTGTCAGAGACGCAGATGTGCTCTTCCAACCACAAAATCTCTGCCGCGTCCAGCTCTCGCTGCCCGTCTCACCAAATTGTCAAATCATCTGCGCTAAGCAATGGCTTCCTGTCAGAGCCCAGAGAAAGAAGAAAGCAATTTATCGGTGTGGTCGGCGGAAGAAAAGCCAGAATCTTTCAGGATTCGGTCTTCAGCGGTTTTCTTTGCATATTAGGGCCGAATTCATGTGGAATTGTGCTGGGAATGATGCATTATGGGTGTTTAATGCTCTCACTGGAGTTTCAGTTGAGTCGAATCAAAACTGTCATGATGAATCAGAAAATGGAGATCTGAAGTGATGAAGATGAAGATCGTCACATCACAATCAGCTTAACACTAACAAGCTGTTACTGACCTCACACACACACACACACACACACACACACACTCACACACACTTACTTTCTCACTCACACTCACACTCTCACACACACACACACACACACACTCTCACACACACTTTCTCACACACACTCACACTCTCACACACACACTCACACACACTTACTTTCTCACTCACATTCACACTCTCACACACACACACACACACTTTCTCACACACACACACACACACACACTCTCACACACACTTTCTCACACACACTCACACTCTCTCACACACACACACACACACACTCTCACACACACTTTCTCACACACACTCTCTCACACACACACTCACACACACTCACACACACTTACTTTCTCACTCACACTCACACTCTCACACACACACACACACACACTCTCTCACACACACACACACACACACACACACTCTCACACACACTTTCTCACACACACTCACACTCTCTCTCACACACACACACACACACACACACTCTCCACACACACACACACTTACTTTCTCACACACACTCACACTCTCACTCACACACACTTACTTTCTCACACACACTCACACTCTCTCACACACACACACACACACACACACTCACTCACACACACACACACACTCACACTCTCACACACAAACACACACACTTACTTTCTCACACACACACATTCACACACACACACACACACACTGGAGGTTTAGTGCGTCCTGTGGACAGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493794 lncRNA upstream 37265 25238 ~ 69472 (+) False G430036
TU494013 lncRNA downstream 36103 155063 ~ 166375 (+) True G430245
TU494041 lncRNA downstream 93162 212122 ~ 212353 (+) True G430268
TU494042 lncRNA downstream 94372 213332 ~ 213645 (+) True G430269
TU494043 lncRNA downstream 95101 214061 ~ 214314 (+) True G430270
TU494044 lncRNA downstream 98629 217589 ~ 217842 (+) True G430271
CI01000306_00044391_00064128.mRNA mRNA upstream 42585 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00135679_00139917.mRNA mRNA downstream 16540 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00235686_00242814.mRNA mRNA downstream 116487 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 126181 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 160698 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 166869 285829 ~ 288715 (+) True CI01000306_00285981_00288513
TU494062 other downstream 116654 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 117951 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 806584 925544 ~ 999902 (+) True G430409
TU494250 other downstream 1031637 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 1090773 1218095 ~ 1218557 (+) True G430124

Expression Profile