RNA id: CI01000306_00135679_00139917.mRNA


Basic Information

Item Value
RNA id CI01000306_00135679_00139917.mRNA
length 1481
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01000306_00135679_00139917
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 135500 ~ 140454 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTAAAATAACGTGGAGGGAAGAACTGCATGTGGGAGACAGATGAGAAATGGATCTGAGACACGACTGAAGGTCCAGTGATGTTGAGAACGTCTCCCACGACCAGTGCCGTCCTCAGCGAGAGAAACCAAACCTCATAAACCCCACACATGGAGAAACATGCAGAATAGTGCTTGTGATGACTCACTTTCCCAAAGTGCTGATGGGATGTGAGAGTCCACTCATGCGTGGTTACCAACACCAGCTCAAGCGTGACTCAGCGGAGCCGTTGATCTGTGCCGACAGAGACGCTTTGGGTCTCGATGAGAGGGAAGAGAGTGGGCCGACGCCAGTGGGCTCAGCTGCCCGCCGGATCACAGCAAAACTCAGTTTAGTTCAGTCGATCGTGAAAGGAGAACAACGAGAGAGACAAAAGCGAGGCAGAGGATCCCTCAGGTTTAGTGTTTCTGAGGGTGGTTTTAAAAACTGCTTGAATGAATTTAAAATGAACATTTTGGGTTTCTCTACTCTAAACACACAAATGGGAAACTCATCTGTCTTCAGAGTAAATTTCATCCCTTCTTTAGCAGGAGGAGCTTCTATTCCCCGAAGCTCTCAGAGACGTCAACGCCGCTCACAAGCATTAGAAACTGAAATCACATTCACAAATGCAAACCAACCACTTCAGCGCGAGACACACGAGAACACCAACACTGATTCCCATCGGGAAACTGGAGCTGACGGGAGTTTCTACAGCTGTGTGAATGTCACGCACATGTGTGTTATTGAGCAGGTCCAGTATCTCCATCATCGCGCGGCGGATCGCAGCACATCTCCGCACATTCAGTCCGCAGTGCGCGTCACATCCACCGGCTCCAGTTCACCGTCCGGCGCTCAGACACACGCGAGCACAGCCGATGACAGGCGCGGGTCTCTGGATGCTGCTGCGTCCATCCTCCCCTAGAGCAGGACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTCAGTCACTGCAGACGCGCACTGCCGCCCAATGGAGAAGATCTTCTGATTCCAGCAGCCATAATGCAGGTGAGGGACACACACACACACGCACACACACACACACGCACGCACACACACACATCAACAGGACACACCAGAACATTGTAAGATCGTGTTTATAATTTGAACAACAGAACTGACATTTTATTTGGATTTTGCCCAATTATGCATAATCCTCCACACTGACATCATCCGATTTTGAGAGACTTTACAAAGATCCGTCATTCCGCGGCTGGATTGGGATGTTCCCGGTGTGTGTGGAACGTGAGGCTCATGAATGGCTCTTGTTTGATTCCTCCGTGGGCCCGTCAGAGCTGTGGCCTCTAAAGCGCCTCTCTGTGAGGGGAATTTCGATGAAGGGCTTCGACACCGAAGAAAAGAGCCCTCAGAGCCTGAGTGGCCCCTCTGTCCTCTCCGTGTCAGAGTTGCGGGACAAACGTGACTCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493794 lncRNA upstream 66028 25238 ~ 69472 (+) False G430036
TU494013 lncRNA downstream 14609 155063 ~ 166375 (+) True G430245
TU494041 lncRNA downstream 71668 212122 ~ 212353 (+) True G430268
TU494042 lncRNA downstream 72878 213332 ~ 213645 (+) True G430269
TU494043 lncRNA downstream 73607 214061 ~ 214314 (+) True G430270
TU494044 lncRNA downstream 77135 217589 ~ 217842 (+) True G430271
CI01000306_00107710_00118177.mRNA mRNA upstream 16540 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 71348 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00235686_00242814.mRNA mRNA downstream 94993 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 104687 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 139204 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 145375 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 157452 297906 ~ 319419 (+) True CI01000306_00297906_00319127
TU494062 other downstream 95160 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 96457 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 785090 925544 ~ 999902 (+) True G430409
TU494250 other downstream 1010143 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 1069279 1218095 ~ 1218557 (+) True G430124

Expression Profile