RNA id: CI01000306_00199114_00202127.mRNA


Basic Information

Item Value
RNA id CI01000306_00199114_00202127.mRNA
length 3086
RNA type mRNA
GC content 0.50
exon number 2
gene id CI01000306_00199114_00202127
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 198960 ~ 202127 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGAAACTGCTCATTGATCAGGAAAAGACATACCAGGAGAGAAAGGAAGAAGAGAACACTAAGAAAGTCACAAGTCTAAAGGACGAACTAACCAAGCTAAAGTCCTTTGCCCTCCTGGTGGTTGATGAACAGCAGCGCCTCGCAGAGCAGCTGACCCAACAAACAGCCAAGGTCCAGGAACTCCAGAATACTGCCACTCAGGCCCAAGACGAGCTGAGCTCCGCCCAAACCCGGTTGCAAGAAGAGGAGAACAAAGTCCATCGCTTGGAGGAGGAGTTACGCAACCAGGCCTGCCATTTCCACCAAGAGCAGGAAGCCATGACTGCCAAACTGACCAATGAAGATGCCCAGAACAGACAGCTAAGGCAGAAGCTCTCTGCACTCAGCCGGCAGTTAGATGAGCTGGAAGAAACCAACAAGACTCTGCACAGAGCAGAGGAGGAACTGCAAGAGCTACGGGATAAAATCGGCCGCGGGGAGTGTGGCAACTCCAGCCTAGTGGCGGAGGTGGAGGAGTTGAGGAAACGAGTGCTTGAAATGGAAGGGAAGGATGAGGAGCTGATCAAGATGGAGGACATGTGCAGGGACCTCCACAGAAAGCTGGAGAAGGAGTCAAGCCAGAGCTGTAGCTTAAAAGCGGAGGTAGACAAACTGAATCACAGAATCATGGAGCTGGAGAAACTAGAGGACGCCTTTGGGAAGAGCAAGCAGGAGTGCAGTTCACTGAAAAGCAACATGGAGAAAGAGCGGACCATGACTAAACACATGTCCAATGAACTAGATGTGCTGAGAGTCAGAATCAAAGAGCTTGAGGCTACAGAGGTTCATTTGGAGAAGACAGAGCTGACACTGAAAGAGGATCTGACAAAACTGAAGACATTGACCGTCATGCTAGTGGATGAGAGAAAAGCTATGGCTGAAAAGTTAAAGCTGATGGAGGACAAAGTGCAAAACAGCACTGGCAAACTGCAGGCAGAACAAGACAAAGTCAACACTGTCACTGAAAAACTGATCGAAGAGAGCAAGAAAGCTCTGCGCTCAAAGGCCGAACTGGAGGAAAAGATGTGTGTTGCCACTCGGGAGAGGGATGAGCTCAAAGCTAAGCTGAAAGCGGAAGAAGAGAAAAACTGTGACCTTCAGTCCAAAGTCAGCATGATGAAAAAGAGGCTTCAATCACTGGAAGCAGTGGAAAGAGAGTTACTGAGGAACAAATCCAAAGAGGAGCACCCGAAGAGCCCAGGTCCTTGCCGCTACCAGCAGGAAGACAACAAAGTGAAAGATTTGACCCAGGAAGTGGAGCGCCTCAGGAGGAAGTTAAAGGAGATGAAGGTGGTTGAGGGTGACCTTTTGAAGACTGAAGATGAGTTTGAATCCCTGGAGAAGAGATACTCCAATGAGCAGGAACGAGCAAAAGCACTGATGGAGGAACTGGAGATGTCCAGGAAGGAGTTGTCCAAGTACCAGTTGGCTGAGAAAGAGGAGTCCAACCAAGAGCACATCCTGTACAAGCGTCTGAAAGAGGAAGAGGCCAAATCCAGTCATCTCACCAGAGAGGTAGAAGCCCTGAAAGAGAAGATCCACGAATACATGGGCACAGAGGAATCCATCTGCCGCTTGAAAACAGACCACACGACCCTACAGAGAAAACTCACCCAGCAAGAGGTCAGGAACAAAGAGCTGGCCAGAGAGATGGAGAACCTTACACGAGAACTGGAGAGATACCGTCGCTTCAGCAAGAGCCTACGACCAGGCATGAACGGAAGACGTTTCTCAGATCTACAAGTCTCCACAAAGGAGGTGCAGACGGACCCAACAGAGAGCCTGTCCCCGAATTACAGGAATCTTGCACCGCTGGAACGTGCCCTGGTCAACGGCAAGCTGTACATGGAGAGCGATCCAGAGGACGAGGCAAATTACAATGAGATCAACCTCACAAAATGCACTCCGTCGCTCATGAACAATGTCAACAATCTGAACAACAACATGAGAAGAGTAAGGGGCCCTTTCCTTAAGACTAGAGAAAGTCATCATCCAATGAATGGCAAGGTACAACCGAGACAGAACGGTAATCACGTTCAGCAGGGGGACGTGGTCCTCACACACAGTCCTGGGCAACCTCTTCATATTAAAGTGACCCCTGACCACGGGCACAACATTGCAACTCTTGAGATCACGAGTCCCACCACAGAGAACGCCCAGTCCTATACAAGCACGGCGGTCATCCCGACAAGTGGTGCCCCTCCGAAACAGCGAATCACAATCCTCCAGAACTCTTCGATCTCACCTTCCAGCAAGTCCAAGGGAACTCCTCCGGAGAGTCCCTGCAGTCCCAGCACTCCCGATCGCTCCATGTCTCCGCTCACCATGGCAGCCTATTCGCAAACTCTATCTTCTGAGTCCTGTGGATCGGTGACCCCAGACCGAGCCATGTCTCCCATTCAGATCGTGTCCGTCACCACTGGAACCCCTGACCGGTCAGAGCCGGTAGAGCTTGTGGGAGGTCATACCGTATTCCGTGTGAGTCCTGAAAGGCAGAACAGCTGGCAACTACAGAGGTCCAACAGCTCAGGTCCAAACGTCATTACCACTGATGACAACAAAATCCATATTCACTTAGGGAGCCCCTACATTCAAGCCGTGAACACCACGGGCAAATCCATCAGCCCCTATTACTCCCTCGGGCCGGAGCAAAGGATTCCAGTGTTAGCCAATGGCACTCCAGCCAAAGGCAACAACAAAATCACAAGCAGCATCGTGATAAAACCCACATCCAGTCCCATCTCACGGCCCTCACAAATTACATCGTCGACCCCTGGCTCCGTGATCTACTGCTCCTCCACACCCTCAGATCTGTTGTTCTTGACTGCAGTAGCAGCTAACCTGTGCAACTGTAGTTTCTTTTGTTGGTTTGATTTCTTTGTTTCTGTTTGATTAATAATGAGATGTTTATGTGCATGATATGTAAAACAAAAGCAGAGAAAACCACACATAACAAGAACACAAGCACTTGTGCTTTTTCACTTCACTTTGAGGTTAAGTGCACTTACTGTTTTTGCTAGATAGCAAATGATCCTGTACCATTAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495411 lncRNA downstream 13390 184011 ~ 185570 (-) False G431505
TU495476 lncRNA upstream 201090 403217 ~ 403559 (-) True G431546
TU495480 lncRNA upstream 207330 409457 ~ 409722 (-) True G431550
TU495481 lncRNA upstream 208301 410428 ~ 410715 (-) True G431551
TU495486 lncRNA upstream 215670 417797 ~ 418042 (-) True G431556
TU495500 lncRNA upstream 318833 520960 ~ 521551 (-) True G431568
CI01000306_00152291_00171300.mRNA mRNA downstream 26285 152051 ~ 172675 (-) True CI01000306_00152291_00171300
CI01000306_00120309_00130096.mRNA mRNA downstream 68689 119066 ~ 130271 (-) True CI01000306_00120309_00130096
CI01000306_00065259_00085553.mRNA mRNA downstream 113407 64341 ~ 85553 (-) True CI01000306_00065259_00085553
CI01000306_00034884_00043015.mRNA mRNA downstream 155348 34812 ~ 43612 (-) True CI01000306_00034884_00043015
CI01000306_00006427_00026938.mRNA mRNA downstream 171508 5306 ~ 27452 (-) True CI01000306_00006427_00026938
CI01000306_00214122_00218144.mRNA mRNA upstream 11695 213822 ~ 218144 (-) True CI01000306_00214122_00218144
CI01000306_00264107_00273791.mRNA mRNA upstream 61750 263877 ~ 273791 (-) True CI01000306_00264107_00273791
CI01000306_00291753_00295570.mRNA mRNA upstream 89217 291344 ~ 295570 (-) True CI01000306_00291753_00295570
CI01000306_00321852_00325373.mRNA mRNA upstream 119412 321539 ~ 325373 (-) True CI01000306_00321852_00325373
CI01000306_00331605_00336103.mRNA mRNA upstream 129202 331329 ~ 336103 (-) True CI01000306_00331605_00336103
TU495328 other upstream 246577 448704 ~ 483649 (-) False G431428
TU495330 other upstream 246577 448704 ~ 483649 (-) False G431428
TU495331 other upstream 246577 448704 ~ 483649 (-) False G431428
TU495332 other upstream 246577 448704 ~ 483649 (-) False G431428
TU495333 other upstream 246577 448704 ~ 483649 (-) False G431428

Expression Profile