RNA id: CI01000306_00235686_00242814.mRNA


Basic Information

Item Value
RNA id CI01000306_00235686_00242814.mRNA
length 3616
RNA type mRNA
GC content 0.42
exon number 11
gene id CI01000306_00235686_00242814
representative False

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 235447 ~ 242861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTAAAACAATTGTTAAACAATAAATCCATAATATCTAATCTCACATTAAACGCGAAAAACAGTCATAAAGGAATGTAGTAACCATAATAATGGGATTCGGAAATGATCAGATGCCAAATACGGAAGTTAATTTAAATATTTCGGTGAATCGAAAGTGTTTTTAACGACACATGCCGTTGTAGCGCTTTTGCATTTTAAATTTAAGCGGTTACAGACAAACAAACAAAAGTGCAGTGATGGAGCGCATGAACATGATTAATTATATCAGTGATCTGAATGAGAAGACTCGCTCTTTATTAATGACGAAACTCAACAAGCACTTGAGCAGGAGAAGAACAACAACAGGGAGTTTGGAAGACACCCTAAAGAGCCTACAGGATATTTATGGAGAGAAAAGAGCATTAAAAAAGGTCAAGTCCATAGTGAAAAAAATCAGAAAACAAATGGATATCAAAAATGGTGGCAGTGTTCAAACACATTCTGGAAACAACCTTCCACAACAACAGCATAATAATAATAATAATTCTACATTACTCGGGCAACCATCGATTCAGAACCCAAATAACATTACAATTCACCAGAAGGATGGTGGATCAATACTTGCTCCAAACATGGTAGGAAACATCATAAATGGTGATATTACCATAAATCAACATGCGTTGTCTCACTCTACCTCGATAAACAAAGATGAAATTCTTCAGAATGTAAAGAATAAGATGAAAACAAGAATGCTGAGTGACTCTGAGAGGATTTTGGAGGGAAGTGCACCACGGTCGGTCTCTCTAAACAAGATCTACACTAAACTGTTTATAATCGATGACGAGTCTGACCCCATCAATAGAGAACATGAGATCTGGCAGATCGAGATGACGCATGATTTAAACACAGCAGCGCAGACAGTCATAAACTACAATGAAATCCTTCAACCGTCCACAGATGAAAATAGAAAAATGATGACTGTTTTAACTAAAGGAATTGCCGGAATTGGGAAAACAATCACCGTGCAGAAGTTTGTCCTCGACTGGACGAGCGAAAAAGCCAATCAAGATCTAGAGCTTGTGTTTCTGCTCCCCTTTCGAGAGCTGAACTTGATTGAGGGAGAAAAGAGTCTTTTTGACTTGCTTTGTGTCTTTTACCCCGAGTTTAAAGAGATGAGACCGATCTCTGATTGCATCTGTGATAGGAAAGTTCTGTTCATTTTAGATGGTCTGGATGAATATAAAAAGGATTTGAACTTTCAAAGCCGCCTTTTGTCAGATGTAACTGAGAAAGCCACAGTGGATGTCCTTCTAGTAAACCTTCTACAAAGAAAACTGCTTCCATCCGCTCATCTGTGGATCACCAGCCGGCCCGTCGCAGCTGGACAGCTTCCGAGGGAGATATTCTTACGTGGATACAAAACACAGATCAGAGGATTCAGAGAAGAGCAAAAGGAGGAGTATTTCATGAGGCAACTTGAGGATCCAGAGCTAACCAACGACATCATCTGTCATCTAAAGTCTCAAAAGAGCCTGTGGATATTGTGCCACATACCTCTATTTTGTTGGATTTCAGTGGTTGTTCTTAAAGACATAATTGCAAGTCAAATTAAAGATAGGAACATGCCCTCAAATCTGACAGAAATGTACATCCACTATCTGCTCATTCAGACCGGGTTGAGCCACAAGAAATATCAAGGGGAAGAACTGTCACAAGAAGATGCTCTCAAGAAGCATGATGAACTGATTATGAAACTGGCAGAGCTGGCATACTGGCAGCTGAAGAAACAGAATCCGATCTTCAGAGAAGAAGACTTGATGAACTATGATATCACTGTTGATGAAGCGCATCAATATCCTGGTGTCATTACCTGTGTCACAGAGGGCGACATTAGATATTACAGGAAAAAACTTTTCAGTTTCATCCATCTCAGTGTCCAGGAATTCTTTGCAGCCTTGTTTGCGTTTTACACATTTCTATCAGGTAATCAAGACTCCCTGAATTTAATTACAGCTAAAAAGAGGCAGCAGTCTAATTTGTGTGATTTTCTCAAAGATGTGATTGATGTGGCCTTGCAAAGTAAAAATGGACACTTGGATCTTTTTATGTGTTTTCTCTTTGGGATTTCTTGCGATTCCAGCAGAGATCTACTTGAAGGACTTCTGCCTCCATTATGGACCAGTAGTTTAGACAGTCACAAAAAGGTGACCACGTACATTAAGTCTTTGAAGAGGAAAGGTCTGTCCTCTGAGAGATGCATCAGTCTTGTTCGCTGTCTCGTTGAGCTCAAGGACACATCATTTTTGCAGGAGATGCAAGATCTTGAATGCTCACGGTCCAAAGAGCCTCTCACGCTGTTCCAGTGCTCATCTCTGGCTTTCCAGTTTAGGATGTCAGATATGAAACATGATAAGTTTGACCTCAGGAAATACAACATCACTTTAGAAGGGTTTCAGAGATTTTCTCCAGCCATCATGTGCTTCAGAAAGGCATTGCTCAAAGGAAGCGGATTTACAGAGCAGCACTGTAAGAGCCTGACGAGTTACCTGAAGTCACCAAACTCTCACCTGACTGATCTTGATCTGAGCCACAATGCTCTGGGAGGGTCAGCGCTGAAGCATCTTTCCACTGCGCTCTGTGATCCCAACTGCCAGATTCAGATCCTGAATCTCAGCCACAATGACCTCCAGAGTCAGGACATGGAGCTGATCAGGGATGTGCTTTCAGGAGAAAATATGAATCTGAGAGTGCTGAATCTCAGTGACAATCCTCTAGGTGATTCAGGAGTGAAGATTCTCTCAGCTGGACTGCAGAGCACAAACTGTCATCTTGAAGTTCTGAAACTTTCAGGCTGTCAAATTAAAGAAGGAGTTTATCAGTTGCTGTCGTCTTTGAAAGCCAATCCTTCATGTCTGAGAGAGCTGGATCTGCGGTATAATGATCTTGGAAACATCGGACAGGAAATTCTTAAGGATGAGTACCTGTGCTCACTGAGAATTTCTACTGGAGGAGTCTGTGGTCCCCAACCAGGACTCTACAAATATGCTGCTGTCACGCTCACCTTTGACCCTCAGACGGCTAACGAATACCTCCATCTGAATGAGAACAACACTGTGGCCACTCGTCAGAAGGAGAAACAACAGCTTCCTGATAATGACGAGAGATTTGTCATGTGCAACCAGGTCCTGTGCCGCCCGCCGCTGTCAGAACGCTGCTTCTTTGAGGTGGATGTGATTGGGCCAGACATACATGTGGGCGTGGCCTGTGAGGGAATGGAGAGGAAGGGAGCGAGTGATCGAGTACGACTGGGTCGCAATGAGATGTCGTGGAGTTTATGTTGCTCAGATAATGTATGTGTGGCTCAACACAACCAGAAAACCGTATCAGTTCAAACAGAGTCCATCAGGAAAGTCGGCGTGTTCCTGGACCGGAAGGCTGGAACAGTTAAGATCTCAGTTAAGATGTTTATGGCACATGATTCAGTGGTACTAAAATATGCAGTGGAGCTGAGCTCATTTTTAAACTCTCAGATGATCTTTATGATTCAAACCTTCGAAACGAGTCAAATCTACACGGATGCTGTATAACAAATACATGCGATTTGAAAATTTGAGAACATTTTGAGACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494058 lncRNA upstream 4352 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 5895 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 17605 217589 ~ 217842 (+) True G430271
TU494043 lncRNA upstream 21133 214061 ~ 214314 (+) True G430270
TU494042 lncRNA upstream 21802 213332 ~ 213645 (+) True G430269
TU493975 lncRNA downstream 24914 267775 ~ 337110 (+) True G430207
TU494074 lncRNA downstream 25381 268242 ~ 268866 (+) True G430297
TU494079 lncRNA downstream 110615 354135 ~ 354225 (+) True G430302
TU494081 lncRNA downstream 174947 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 206183 449044 ~ 483614 (+) False G430067
CI01000306_00135679_00139917.mRNA mRNA upstream 94993 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 116487 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 171295 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00245734_00262949.mRNA mRNA downstream 2280 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 36797 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 42968 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 55045 297906 ~ 319419 (+) True CI01000306_00297906_00319127
CI01000306_00327727_00330881.mRNA mRNA downstream 84866 327727 ~ 330932 (+) True CI01000306_00327727_00330881
TU494205 other downstream 682683 925544 ~ 999902 (+) True G430409
TU494250 other downstream 907736 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 966872 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1905521 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2730295 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008301 False 3391 mRNA 0.46 9 NC_007122.7 44265722 ~ 44276686 (-)