RNA id: TU494061



Basic Information


Item Value
RNA id TU494061
length 370
RNA type TUCP
GC content 0.37
exon number 2
gene id CI01000306_00235686_00242814
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 235447 ~ 242861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATATATATATATTTATGAATGTGTATTTGTTTGTTTTTTCCACCTCAGTTGTCTCACTCTACCTCGATAAACAAAGATGAAATTCTTCAGAATGTAAAGAATAAGATGAAAACAAGAATGCTGAGTGACTCTGAGAGGATTTTGGAGGGAAGTGCACCACGGTCGGTCTCTCTAAACAAGATCTACACTAAACTGTTTATAATCGATGACGAGTCTGACCCCATCAATAGAGAACATGAGATCTGGCAGATCGAGATGACGCATGATTTAAACACAGCAGCGCAGACAGTCATAAACTACAATGAAATCCTTCAACCGTCCACAGATGAAAATAGAAAAATGATGACTGTTTTAACTAAAGGAATTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494058 lncRNA upstream 5816 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 7359 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 19069 217589 ~ 217842 (+) True G430271
TU494043 lncRNA upstream 22597 214061 ~ 214314 (+) True G430270
TU494042 lncRNA upstream 23266 213332 ~ 213645 (+) True G430269
TU493975 lncRNA downstream 30406 267775 ~ 337110 (+) True G430207
TU494074 lncRNA downstream 30873 268242 ~ 268866 (+) True G430297
TU494079 lncRNA downstream 116107 354135 ~ 354225 (+) True G430302
TU494081 lncRNA downstream 180439 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 211675 449044 ~ 483614 (+) False G430067
CI01000306_00135679_00139917.mRNA mRNA upstream 96457 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 117951 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 172759 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00245734_00262949.mRNA mRNA downstream 7772 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 42289 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 48460 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 60537 297906 ~ 319419 (+) True CI01000306_00297906_00319127
CI01000306_00327727_00330881.mRNA mRNA downstream 90358 327727 ~ 330932 (+) True CI01000306_00327727_00330881
TU494205 other downstream 688175 925544 ~ 999902 (+) True G430409
TU494250 other downstream 913228 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 972364 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1911013 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2735787 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile