RNA id: CI01000306_00297906_00319127.mRNA


Basic Information

Item Value
RNA id CI01000306_00297906_00319127.mRNA
length 4087
RNA type mRNA
GC content 0.57
exon number 20
gene id CI01000306_00297906_00319127
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 297906 ~ 319419 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTTCTTGTGTGCAGTGTTGGGCTTCTGGCTCTGCTGGTGTCGGTCCAGTGTCTGACCCGGGAGCAGCTCTTCGATTATGGGATACAATTCGGCGACCGGATTTTGGAATCCTCAACTGATTCGGTTAAAGAGCTCGAGCTGGAGCAGACGCTCTTCTTCTTCAAAGGAAAGTTCGATAAAGTTTACCCTGTTGTCCAGGTGGAGGTTGTGTTTGGAGCTCCTCCGGGTTCTTTGAGATCTCCTGAGGCGATGTGTACCGATCCTCCCGCTGTGAAGCAGCTGCACAGGCCGATGGGGGTCAGCACCAATGGCTTCATATCTATGGCTGAACCCAGCGACGAGTCCGAGTACCTGGGGAAGATGCCGGCCAGTTTTGGCATGATTGCAGCGTTCCTAGGAGATCTGGATACTACCGACGGTGCCGGTTATGTCTATTTCCGCCAGGATAAAAGTCCTGATGTGCTCCAGAGAGCTGCAGATCACATTAGGCAAGCGTTTCCTACTGACGAGGGGATCGAACCCACTCACGCCGTCATCGTCACCTGGGAGAATGTGCTGGGTCAAGGAAGTGACCAAGGAGAAGGATTTGAGTTTGCAAGAAATACTTTCCAGCTAGTTGTAGCAAACATGGATTCGGCGTCCTACGCCATCCTGCTGTATCCAGAGGAGAAGATGCAGTTCGGTTCCACGCTCATAGATGATGTAGACGTGCACGTAGAGGTTGGGTTCAGTGAAGGCATTGTCCCGGGCTGGTTCGGCTGGTCGAAAACTCAAGGATCTTACTACCGCATCACTGAAGACAGCGAGGATTCGGTCAGCGCTCTCGCACTGTATGACGGTTTATACATAGTTTTCTGTCTCATTAATCATGCATACATATTGTTTTTCTCTGCTGTGCACGACCCCATCAGAAGGGAGACAAACTCAGGCCAGCCTGGCGTTTGGGTCTTCGAGATCGGCACGTCTCCGTTGTTCACCTCCATCATGCCTGGACAGATCACGGAGGTCACAGAGGTCACGTCGGAGGAGACTGTGGTCGACACACCCGCTCCTGAGCCGACGAGCATTCAGACCTCGGAGCCTCAGTACGAGCCGCTCACGAGCCGCCCAGAGCCGCTCTCAGAGTCGTCCACCCCTGACGAGTTTCAGTACCGTTATGTGCCGCCGCAGCAGCAGCCTCAGAACCCCGAGGTGCTGATCATCGATGAAGACGAGCTCAGCGTCAACGTGTTTTCTTATAATTACGAGACGTGCTCCAGCAACAAGCACAAGTGCTCTGCTTTCGCCGACTGCAAAGATTACACCGACGGATACTGCTGTCACTGCAAACCAGGTTACTATGGCAACGGCAAGGATTGCATCGCTGAAGGCAAACCCCAGAGGATGAACGGGAAGGTGAACGGCAGACTGTACGTTGGGAATTCTCCATCTCCTGTGGAGTTCTCCAACAATGACCTGCACTCGTATGTGGTGGCCAATGACGGCCGGGCGTACATCGCTGTCAGCAGCATCCCGGCCAGCATCGGACCCTCCTTACAGCCGCTGCCTGCTCTCGGAGAGGCCATCGGATGGGCGTTCGCACTGGAGCAGCCCAACTATCACAACGGCTTCAGCCTCATCGGAGGGGTTTTCACGCGCCAGGCCGAGGTGGTCTTCCAGCCCGGCAACGAGAGGCTGACCATCAAACAGGAGTTTGGTGGCATCGATGAGCACGATCACCTGGTGGTCAGCACACATCTGGACGGCAGGATCCCGGAGGTGCCGCGCGAAGCCACGGTCCAGATTGAGCCATACAACGAGATTTACCAGTATTCCAGCAACCTGATCACGTCGTCCTCGCGGCGGGACTACGCCGTTAACATGCCTGACGGCAGCGTCCGCACACACAGCTACCTGTGGACGCAGAGCATCCGCTTCCAGAGCTGCCCACACGAGGAGCTCATGAGCTCAGTGCCAGACAGCCAACAGCTCAGCGTCGACCAGATCTTCGTCATGTACGACTCCGGCAACCAGCTGATCCGCTTCGCCATGAGCAACAAGATCGGCTCCGTCCACAGTGGGATCCCTGAGCAAAACCCCTGTTTCACCGGGAGACACGGCTGCGACACCAACGCCATCTGCCGTCCGGCTCAAGGCAAAGACTTCACCTGCGAATGCGCCGCTGGATTCACTGGAGACGGACGGGTTTGTTACGATGTGGACGAGTGTTCAGAAAGCCCTCAGATCTGCGGCTCTTACAGCGTCTGCATCAACCAGCCCGGAAGCTTCCGCTGCGAGTGTCTGGACGGGTTTCAGTTCGCCAGTGACGGACGGACCTGCGTCGAAACGGAGCGTCCCGTGGATCACTGTCAGAGAGGAACGCACGACTGCGACGCTCCCGAACGCGCCAGATGCCGTTACACCGGCGCCTCGGCCTACGTCTGCGTGTGTCTGCCGGGCTTCTCCGGGGACGGACGGACCTGTCAGGATGTTGACGAGTGCCAGACGGCCCGTTGCCATAGTGATGCCATCTGCTACAACACCCAGGGCTCTTTCACCTGTCAGTGTCGGCCCGGTTTCCATGGCGATGGCTTCAGCTGCACACCTGGTTCTGACGGCGAGCGGACGGCGTGTGAGCGACACAGAGCCGCGGCGCTGGCCTCGACCTCTTCCTCCTTCCACCCGCGTCCGGCGGTCGGTCAGTACGTGCCCTCCTGCGACGGCTACGGCGCGTACGAACCCCTGCAGTGTCACGCCAGCCTTGGCCAGTGCTGGTGCGTGGACGCGTCGGGACAGGAGATTCCCGGCTCCAGAACCGAACCGGGCCGCAGACCCATGTGCATTGATCACAATGTGGCTCCGCCCCTCATTGGCCCCACCCCCAGGCCTGACATCATCCCTCTGACTCCCGGAGCAAACCTCTTATTCGCTCAGAGCGGCAAAATCGAGCTCCTCCCACTGGACGGCAGCCGCATGAGCGCAGACGAGGCCAGGACGCTTCTGCACGTGCCCGGTAAAGTGGTGATCGCTGTGGCGTACGACTGTGTGGAACAGACCGTCTACTGGTCCGACATCACACAACCCGCCATCAGCCGCGCTGCCATCACGGGCGGGCAAACCAGCGTCCTCATCAGCAGAGATCTGGGCAGTCCTGAAGGAATCGCCATCGATCACATGTCCAGAAACATGTACTGGACCGACTCCATCCTGGACCGCATCGAGGTGTCCCGGTTAGACGGCAGCCACCGCCGCGTCCTCTTCGACAATGACCTCATCAACCCTCGACCAATCATCGCTGACCCCGCCCACGGACACCTGTACTGGGCCGACTGGAACAGAGACGGGCCGAAGATCGAGCGCTCCAGCATGGACGGGACCGACCGGACGGTGCTGGTGCAGGACGGCCTGGGGCTGCCCAACGGATTGACCTATGACCCCCAGAGCCGGCAGCTGTGCTGGGCCGACGCAGGGAAGCGGTGGTTGCTATGGAGCGTCAGGATGGGATGGAGGTGGAGGAGTTTCTTCCTCAGAGACGTTCACGCACATACGGCATCACCATCACTTACCCACAATGCCCTGCAGGTCAGAACTACTGCTCCGCTGAGAACGGCGGCTGTTCGCACCTGTGTCTCCCGCGGCCCGGCGGATTCTCCTGCCGCTGTCCCGACGCCAGAGACGGATCGTGTGTGGAGCCGGACCAGAACTTCTGAGCGACGGAGAGATTGGTTCACAGCGCGTCTGCCCGTATCCGTGTGTTTTGATGCAGAACCATATCAGGGATTCATTTTCCTCAAAATCCTGCAAAAGTCCTGAACAGTTTTCTGCTGCACATTTATAGTTTCTGGAGACACTTTACAATAATCTCCATTAGTTGATGCATTTATTACAGCATTTATTCATCTGTGTTGATAAAAATGCAGCTGTAGTTCATATTAACAGATACAACATTAGATTTTAATAATGCATTAATAAACGCTGAGATGAACAGATGAACAGATGCTGGAGAAGAGAATCGTTCACTGATGGATCTTTATTGTAAAGTTTGACCAGTTTTTGATGTAAAGTCCAGATTTCATCTCTGTCGTGAAACAGAGCAGGTGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494074 lncRNA upstream 29040 268242 ~ 268866 (+) True G430297
TU494058 lncRNA upstream 66811 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 68354 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 80064 217589 ~ 217842 (+) True G430271
TU494043 lncRNA upstream 83592 214061 ~ 214314 (+) True G430270
TU494079 lncRNA downstream 34057 354135 ~ 354225 (+) True G430302
TU494081 lncRNA downstream 98389 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 129625 449044 ~ 483614 (+) False G430067
TU493830 lncRNA downstream 162395 481814 ~ 483614 (+) False G430067
TU493832 lncRNA downstream 162395 481814 ~ 483614 (+) True G430067
CI01000306_00285981_00288513.mRNA mRNA upstream 9191 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00279658_00285330.mRNA mRNA upstream 12412 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00245734_00262949.mRNA mRNA upstream 34655 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00235686_00242814.mRNA mRNA upstream 55045 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00135679_00139917.mRNA mRNA upstream 157452 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00327727_00330881.mRNA mRNA downstream 8308 327727 ~ 330932 (+) True CI01000306_00327727_00330881
CI01000306_00344942_00353683.mRNA mRNA downstream 25128 344547 ~ 354116 (+) False CI01000306_00344942_00353683
CI01000306_00367856_00370281.mRNA mRNA downstream 47003 366422 ~ 371450 (+) True CI01000306_00367856_00370281
CI01000306_00384380_00391350.mRNA mRNA downstream 64611 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00399584_00413590.mRNA mRNA downstream 80114 399533 ~ 414128 (+) True CI01000306_00399584_00413590
TU494062 other upstream 60537 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 606125 925544 ~ 999902 (+) True G430409
TU494250 other downstream 831178 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 890314 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1828963 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2653737 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007214 False 5734 mRNA 0.47 19 NC_007122.7 44562724 ~ 44603629 (+)