RNA id: TU494079


Basic Information

Item Value
RNA id TU494079
length 91
lncRNA type sense_over
GC content 0.47
exon number 1
gene id G430302
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 354135 ~ 354225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGATGTTAACATTTTCTCCAGTGAGGTTAAGTGTCCAGCGAGATCTTGAGGTCATCTTGGACTTTTCTTTCTCCCTCTGCAGCAAACGCCCTTGGCGTCGAGCGTCAGACTGCTGTGATTGAGCCGGATGTTCCAGCTGTCGTGATTACAGAGGAATATCAGCAGATGAAGGACGGACGTGTGTATGTGTTCCGCTTGTGTCCCTGAATATTGTGTCTGCTGTAAAATAACACCTTCACACACACACAACCTTGCACTGTCTTTTACACATGTAAAGTTGAGTTCATCCACAATACAACAATATTTGCCCATAAATAAGTGTCTCGCCGCCGTGAGTCCAGAGGGGACGTCCTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493975 lncRNA upstream 16366 267775 ~ 337110 (+) True G430207
TU494074 lncRNA upstream 84610 268242 ~ 268866 (+) True G430297
TU494058 lncRNA upstream 122381 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 123924 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 135634 217589 ~ 217842 (+) True G430271
TU494081 lncRNA downstream 63583 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 94819 449044 ~ 483614 (+) False G430067
TU493830 lncRNA downstream 127589 481814 ~ 483614 (+) False G430067
TU493832 lncRNA downstream 127589 481814 ~ 483614 (+) True G430067
TU494087 lncRNA downstream 153207 507432 ~ 507773 (+) True G430309
CI01000306_00327727_00330881.mRNA mRNA upstream 22544 327727 ~ 330932 (+) True CI01000306_00327727_00330881
CI01000306_00297906_00319127.mRNA mRNA upstream 34057 297906 ~ 319419 (+) True CI01000306_00297906_00319127
CI01000306_00285981_00288513.mRNA mRNA upstream 64761 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00279658_00285330.mRNA mRNA upstream 67982 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00245734_00262949.mRNA mRNA upstream 90225 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00367856_00370281.mRNA mRNA downstream 12197 366422 ~ 371450 (+) True CI01000306_00367856_00370281
CI01000306_00384380_00391350.mRNA mRNA downstream 29805 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00399584_00413590.mRNA mRNA downstream 45308 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00424179_00424623.mRNA mRNA downstream 69551 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00442430_00460709.mRNA mRNA downstream 88205 442430 ~ 461183 (+) True CI01000306_00442430_00460709
TU494062 other upstream 116107 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 571319 925544 ~ 999902 (+) True G430409
TU494250 other downstream 796372 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 855508 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1794157 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2618931 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile