RNA id: TCONS_00021712


Basic Information

Item Value
RNA id TCONS_00021712
length 3976
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_009903
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24198479 ~ 24207903 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTATTGAAAAGAAGAGTTGtggttaaaatagttttattatgtGTTTGCTCTCTCCACCGGCACATTTGAGACTCACGGAGCCGTGAGGGGAATTTGGTGGCGGGAAAACAGAGCTGACGGGTCTCTTTGCGTCTAATTACGGAAATGATGCATGTTATGTGGCTGTATTCCCTACTTCAGTGTGTAATCGCTGTGCTGGTGGTTGGTGTGAGTGTGAGGTTGAGCTTGGCTGCTGGTTCGTTTGCAGCTGTGGCAGGAAGTAGAAGATGGAGCACATCTGCATGCCTGAAGCTTTGCCTCGGCTTGGTTGGGTCAGTGGGCAGTATTGCAGAAACTCCAGTGTTTGTGCTGTTGAACCTGAGAAGTTCCCAGTGCCTGTACACCTGCATTGCAATGGTGTCCTGCCCCATACTGGTCAGGCAGTTCACTGTGTGCATTCTGCTTCTACTCACCCTTAATAATCATCTGCAGCTCCGCCTGGGGAATAGATATGCAGGCTTAGTGACTCGCAGGCGGGTTTTGTGCTTGTTGCTGCTCTGCTGGGTCATTTCAGTGATCACCGCCTTCGGCCAGTTCATTGTTTCTAACTCTTCTGATACCTGGGGAGCTGCTGTGGACGACGATACAACCGGACTCGGGATGGATGAATGGCCTGAAGGAAATGACACCACCCCCGCCCTCCCTCCCAAACGCCCCTACCCCCAGGACCGCTCTGTTATCGGTGAGTTCTTGCCTTATGGAGGTTTTCTGTCCAAGTTCCTGGTGGAGGACAATGAAAACTTCACATACGCCGAGATCCATGGCAGCCACTGGGGCGTCTGTGCCACTGACACCACACTCAGTCCAGTCTTCCTAGTGTATGTTTATGCTGTCACTGTGTTTGTTATTCCTTTGTTGGTTTTACTGGCCGTGTATCTGGACTTGACGTGCTTCATGCCACAGCGGGTTTCTGCGTGCTCCACATTTTCTCAGAAACGAAGCTCTGTTTGGTCTCGCTCTTTGGCTCTCTCTATTTCTCTGCTGATAATGCTTTGCCTGCCCCAGCACATCACCCACGCTTTGTTACTCTTCGCCCCGAGCGCCACTAGACCCGACTGGACCTCTCTGACGGCCTCTGTTCTCTTCCAGATCTATAGCATAGTGCCCCCACTCCTCTTCACCAGCACCTCTCAGCAGGTAGGCTTCGAGTGCGCCTTGTTATCCGCACCCAACCTGACCTCCAGGGTTATCACCTCTCGAGTCAAATCTGTGCGGAGCGCTTTCTGTTCTGTGGAAGATTTCCATCACAGTGGGCTGACACTCAAAGGCAAAGCATCTCCAGGGTTGTCATGTGAAGAGGGCACTTACAGCTAAAGCTATCTGTAGAGTCATTGCATGGGTCATATCTAATTATATTCAGCAGTTAGGTTAAACTCATTCAATATTAGCTCATGGCTATCTGCTGCATTTGCATTAGGGTCGTTCATGTCGTTTCAGGCAATGAATGAAGAGAGTTACTGCACATTGATTTTGTTCACACTTACTCTGTTATGTGAAACCAAACCTGGAGTCTGCATGAAATATCATTTTTTATTCAACTGCCTTAAATTGTAATGGACCTGCATTACTTTTATAGGTAGTCAATTATgtgggcactttttttttttaatttcaatgaATTCTTCATGGTTAATGATTCCAAGCACTGTTTGTTATTCATCACTCTGTGTGCTGTTTAACCAGCATAGATAGTGTGTATACGCTTATTTCATGCGGCCACCATTTTAAAGAACGAAAGTgaggctgcagtgggaagaaacctggaagtctaggaccagcactgtaaatatTGCAACAAGATGCTGTTGACTACAATAACCTGCTGTTGCCATGATTTAaaaatgcagatatggtgtaaacatccCTTTAATATCCTTCAGttgagtttaatttaaacaattaaaagcacaCTAGGCGTCAAACAAAATCGCAATCTCTTTAGGAGTAATACGTGTAAGTGTCCTCATAGACTTCaattcatggcaccaggtaaacaacGTGGGGAcacttccctgcttcagcctatatGGTTagcgataaaacaatgcagtccttgtactggtactgaagttttaaaaatgtccaattcccgctaacatttaaaaagcggatttgccatagtattcatcagtgctcaacagaaatgactgtgattggccatgaaggttaACAATTCACCATTCTTTACAgattgcaaacacagatacacagacactGGAATCGTTTTAAAGCTGTGAAGATCAGTCAATTTGTCAAGTGGATTGCTTGTCTGGGTAAACATCATTGAAGTGTGGTAAACTGATGaacttcacggccaatcacagtcatttctgttgagcatgtgcacacaatggcaaatcagcagtgtttaagaacgcCATCAACGGTGCCTTACAATGgacgttttttttattattttagtaccGACATTTTGTATCATGACTAGTCTAATAtaatgaaagaatcagttcattaacttaagTTTgttaaatggcatctaaaacgtgtgtagtgccatttcccttaacttccCTTAAAATGAGATCCAAtattcctttttattttcactattcattAAGATCGGACTTTCAGGTCACTCAGAAGCCAGGTGTACAGCCAGATAAACAACATTTCTGTGTGACTCAAGCAATACTTCTTTCCACTGCAGCCTGGATTTCGTAGTTTAAAATGatggccgcgtgaaatcagtctgtAGTAGATTAATCCACACAGTTTTATAAATGAAACCATTAGTTGAACTGATGGGTACGTTAAGTCAGATCAGATCAGAGGTTTTCATTAATAGACCAGGATGCTAATTACAGTTAATATTATGTCATTTACTATCAATAACATACTTTTATTCATAAGTAATCTACTCAACACTGTCTAAAATGAACCTTACCTTTTAATTTTCTTCATGCGAACTTGCCTTTTAAGTTAGAAGTTGATTCTCACAACTGTCAGGTTGAAAATTAATCACAACTTATGCAAAATACCTGCTTAGAATTAAAACCTCAAATGTAGTGATctaagaaaaaaactgaaaagtttAGAAGTTACATTCAAAATACAATTTTCTGTTAAGTCATTTTCAAGTCTACTTTTCTTGGTCACCAGCTAGAGTTCCCACCAGACACATTAGACTCTACACCTCATATCTGCCACTCAACCGGATTACACCTCCCATAATCCTATGCACATCACATCTGATGTTTATGAACTTTGATTGCATTACACCTGCAGCCCATTATCACACATTATATATAGCCATGGCTTATTTATTGATTGTTCCATGTTGGTTCTGCCCAACAGGCAAACTAGAAACTATTAATAACTATTATTccctttcattttaaaaatgaaacattaaaacTTCTGCAAATTCTTTAAAACAGGATCCAAAATCAGGTTAAAACTATAAAACCTGTTCAGTGATTTGCCATTGGGGGGATCTAAGTGAACTAGCTTTATTCATGTGGATttcacaacataggctcattttgaaaacttagccctatataatgtacgtttctggagatcgcaaattatgtagccagagctatggctccatttcattttaaaacgaaagCTATGGTGCGGTATGACGCCAATACTTTTCGCTTACCAGCTGAACACTTAggtccatatggatggctttcctgctgttaccagtttgtctcattagctcaccatgtacgtcgacGGACTTAatatgcagagaggagttgaccacgatgacggtgTTCAAGTcaagtgaagaacggttccagaaagcaggtaagacataaatagaattcaaaatataaaataaaaaagtaggcCTAactaacagggtaagaatgtggcctttttctggattgcttttgaaaattgttggttgggtttagggaagtgggtgggtggccCAATCAATAcaatttgttgggtttagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021931 lncRNA upstream 169861 24019108 ~ 24028618 (+) False XLOC_009902
TCONS_00021932 lncRNA upstream 169861 24019265 ~ 24028618 (+) True XLOC_009902
TCONS_00021711 lncRNA upstream 207320 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019766 lncRNA upstream 207381 23984777 ~ 23991098 (+) False XLOC_009901
TCONS_00021930 lncRNA upstream 207381 23985254 ~ 23991098 (+) True XLOC_009901
TCONS_00021933 lncRNA downstream 308189 24516092 ~ 24524076 (+) True XLOC_009904
TCONS_00021714 lncRNA downstream 357831 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA downstream 364238 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021716 lncRNA downstream 626872 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021934 lncRNA downstream 626888 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019764 mRNA upstream 203837 23984179 ~ 23994642 (+) False XLOC_009901
TCONS_00019765 mRNA upstream 207318 23984755 ~ 23991161 (+) False XLOC_009901
TCONS_00019762 mRNA upstream 218125 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019761 mRNA upstream 218211 23978978 ~ 23980268 (+) False XLOC_009900
TCONS_00019760 mRNA upstream 220954 23976227 ~ 23977525 (+) True XLOC_009892
TCONS_00019768 mRNA downstream 418545 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019769 mRNA downstream 424193 24632096 ~ 24645570 (+) True XLOC_009906
TCONS_00019770 mRNA downstream 473274 24681177 ~ 24695891 (+) False XLOC_009907
TCONS_00019771 mRNA downstream 473323 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019772 mRNA downstream 476204 24684107 ~ 24695887 (+) True XLOC_009907
TCONS_00019751 other upstream 235550 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 343868 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 591127 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 799319 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2494800 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019767 other downstream 308189 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 673219 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 690268 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 697653 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 887580 25095483 ~ 25096562 (+) False XLOC_009919

Expression Profile

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