RNA id: CI01000306_00399584_00413590.mRNA


Basic Information

Item Value
RNA id CI01000306_00399584_00413590.mRNA
length 1309
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000306_00399584_00413590
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 399533 ~ 414128 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAAAAGATACAAAAAAAGAAAATCACATGAGTTTTACCATTCAAAATGAATGTCTGCTTTGTCACCGCAGCATCTCAGGCTGAGAGAAGGATACGGCGGTCCGTCGCCGTGGCAACCATCTCACGGATGCGGCTAGAGACGAAAAATGTTGTTTTCATCATAGTTGTCGCTGTAGTAAACCGAGCTGTCGCTTCTGTGATTTTGAGAGATTTCTGCTGTGTTTTTGTATATTTGGACCTCATGATCTGCATGTGCCCTAAAATAGATTCATTGAGTTCTTGTACTGTACAGCGTGTTTGTTCAGAGGTCACTCTCAGTCGGTGTGTTTATAAAGCCAGCTGTTGTTTTTGTTGTGTTGAGCAAAATACAGTTAAGTGGGTAAGATATTCCGAGATTTCCGGAAAAAGAGTTTGCAGTAGCGCCTCCACCCCAGTAATTACAGCTCGCTGGCTTGGCAGGAGCCCGTTGGAGGAGATTCTGCTTAGTAACCCGTTGTCATGGTGGTGGTCCCGCGCTCTGATTGGACGGGAGACGAGGCCTCAGGGACTCCGACGACGCTCTTGGCCGGGATCCCTGGACCCTCGTCCTCCAAATGACGACTTCCAGCACAAAACCTCCCAGAATGCTTTGCTGCAGGACAAAGGGAGTTGGACAGCGCTTCCGTTCACAAGGCTCTGGAAACGAATCTGTTCGGGGAGTGTGGAGAGGAGAAGCGCTGATGTTGGGCTGGACACAGGGCCTGTCTTTGTGCTGGAGAGTGAATGATGAATGCTCTCTAGACGGCTCGACTTCACTGTTCAGCTGCATCTTTCCTCGCGTGTTTGGTGTGGTAAAGTTATAAATACTGCTTTAAACATCCTGAACCTCACAAGAGCCGCAATTCAGACCTCTCATACTGTTATTCTGAGCATGTTAGGTCACATGACTTCATCTCTGTTATTTGATTGGTGCATCCTCCACACTGGACGGCCTGTACTGTTTGTTGATGTTAAAAAGACACCAAATTAAATTTGTTTGACCTAAGTTTGCTCAACAAAGCTGTCAAAATTAATCCAATATATGATTTTTAACTTTAACTAATGTAGGGCTATGCATTAAAAATATAGCCTATATGCATAATACATGCATTAAAAATGTTAAATAATGAGTGAATTCAAAGAAATGTGTTTTTATGTCTGTGTAACGACTTGAAATGACGTTCCCTTCGGCTGACGTCACTGAGCTCTTATTTTTAACCCCTAAATGTTTAAAGAGTTTAAAAGTTGACAAAACGAACTCTATATGTGCATTTAACATTAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494079 lncRNA upstream 45308 354135 ~ 354225 (+) True G430302
TU493975 lncRNA upstream 62423 267775 ~ 337110 (+) True G430207
TU494074 lncRNA upstream 130667 268242 ~ 268866 (+) True G430297
TU494058 lncRNA upstream 168438 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 169981 217887 ~ 229552 (+) True G430272
TU494081 lncRNA downstream 3680 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 34916 449044 ~ 483614 (+) False G430067
TU493830 lncRNA downstream 67686 481814 ~ 483614 (+) False G430067
TU493832 lncRNA downstream 67686 481814 ~ 483614 (+) True G430067
TU494087 lncRNA downstream 93304 507432 ~ 507773 (+) True G430309
CI01000306_00384380_00391350.mRNA mRNA upstream 7277 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00367856_00370281.mRNA mRNA upstream 28083 366422 ~ 371450 (+) True CI01000306_00367856_00370281
CI01000306_00344942_00353683.mRNA mRNA upstream 45417 344547 ~ 354116 (+) False CI01000306_00344942_00353683
CI01000306_00327727_00330881.mRNA mRNA upstream 68601 327727 ~ 330932 (+) True CI01000306_00327727_00330881
CI01000306_00297906_00319127.mRNA mRNA upstream 80114 297906 ~ 319419 (+) True CI01000306_00297906_00319127
CI01000306_00424179_00424623.mRNA mRNA downstream 9648 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00442430_00460709.mRNA mRNA downstream 28302 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00496203_00497820.mRNA mRNA downstream 82075 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00534481_00545134.mRNA mRNA downstream 120353 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 131537 545665 ~ 554101 (+) True CI01000306_00546664_00553895
TU494062 other upstream 162164 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 511416 925544 ~ 999902 (+) True G430409
TU494250 other downstream 736469 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 795605 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1734254 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2559028 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile