RNA id: TCONS_00021933


Basic Information

Item Value
RNA id TCONS_00021933
length 1856
lncRNA type read_through
GC content 0.40
exon number 3
gene id XLOC_009904
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24516092 ~ 24524076 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtttgtttagatcATGGATACCCAAACCCGGCCCTGAAGGGCTGgtaaagttggttttatgttcgcacatttgttcagtgtCAACTTGTGATAtgttccctatattgtttaccatggtactttaaatattcggtcagaaatcacatgtaaatatgacatcaaaacaacattaacatcatttatttgactgtaaacaatgttgaactttgatagtcattggctgataatatgatttcactatttaaaatgtgaaaataatatttttgtgaagTTTTATTATTTAGGAGAAAACTAACTTTATACCTTAATGccccccaggaccgagtttgggcacccctggtttagatgattCGTATTGTGTTCATATATTTTAGTCCAACCACATCCGAACACTTTCTCAGTGCTCTCAGTTCACTACCATGGTTCGGATAAGCATTCACACTTCTTCAAATGAACTAACAGAGCAATAGCTGTTTAAATTTATCAAGAAAGCTTTTTTGAGTTTGCATTAATCCCTTGTTTTAGGATTAGACTTCAAAACTAATATACAAATACATCTGCAAAGTTTTTAATTGGTTATCCGTAGAAACCACAATCTTGCTGCTGGGCTTTATATCAGAACAGGTGCAATTAAACCCAACACTGGTAAAAGACATCTAATAATCTCTTCTTTTTTCATCCAATGCTATTTTCTCCCTTGATTAATAATTATCAATTTGAGCCTCATCTCATAAACAGATGGCACAGCTTGAAGAGCAGAATTAAACGGCCAGCTAGTATCTCCAAGATGCTCGAGTAAATCCAAATCCCAAGACAACAGCAGATGCACTTATCATGCGATGGCAAGCATGAAATACGCGGCCCGTGTTGGGAATTGCACTGACAAGTCTTGTATATTTGAGACTGATTTGGGACAGTAACTCCTGCGCAGAGGAGCCCAGAGCGGGACCTCCGAACTGCAACAATCCGCTGTGACACGAAACTGCGCTCGTGCACTGACTGTCGCAATACGTACACCTCGACATCCCCAAAGGACATCGGTAAACGAGGGAGCATTACGTATACAACAAAGAGAAGAAATCACAGCGGGTAGAATCTGAACAATGATGCGCGCGAGCATCAACATAATAATAACACTGCGGAGGAAGACACATGTATGCGTGAAATAGATCGACAAAGCGCGTGCATGTGCAGTTATTAAGCATGTTACTAGTGCAAACGGAGTCAGCTGAGGTGCAGTCCTCCATCAATCTCACTCTTTACACCAGCGGCTGCTTGTCAGAAAGAGTGGAGGGTAGAGACTCCACGCTGGACCTGTAGATGGGTTTCTTCTGGGAACGGTCATCACTGAGAGGATGAGAGAGGAAAATATGACAAAGTGAGTGTTTTATCGGCCAGAATAAGGTGCTTTATGGACATATTTCCCAAGCCTGTTCCTTGAGGCACATCATCACTACACATTTGCACTCATCAGCTCACTAACAGAGACTCCCACTGCATCCAAAATCACACACTTGCCATAAAGCGTGCATTCAATGGACATTTTACTACCCAAGGAGGCAGTGGGAGAGGATGTatccatttatttaataaagagaTGCGACTGACGCCGACAGGTCATGTGATAATAACATGATGTGAGGTAATACATaggaatttcattcataataTTTAGAACATACATTTTAATGCTTATGATTTAAGTTCAAATTCAAATCTAGCTTCAGATAGATGTGATTTTGGACACTGAAATGTCCTGAAAAGCATTGTCACATGAAAGAGACATTAAAAATATGCACTGTCAGTATGTCTTTGTTGAAAAACGCACAATTATAAGATTAAATGTGTGCACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021712 lncRNA upstream 308189 24198479 ~ 24207903 (+) False XLOC_009903
TCONS_00021713 lncRNA upstream 308189 24201433 ~ 24207903 (+) True XLOC_009903
TCONS_00021931 lncRNA upstream 487474 24019108 ~ 24028618 (+) False XLOC_009902
TCONS_00021932 lncRNA upstream 487474 24019265 ~ 24028618 (+) True XLOC_009902
TCONS_00021711 lncRNA upstream 524933 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00021714 lncRNA downstream 41658 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA downstream 48065 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021716 lncRNA downstream 310699 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021934 lncRNA downstream 310715 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA downstream 371941 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00019764 mRNA upstream 521450 23984179 ~ 23994642 (+) False XLOC_009901
TCONS_00019765 mRNA upstream 524931 23984755 ~ 23991161 (+) False XLOC_009901
TCONS_00019762 mRNA upstream 535738 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019761 mRNA upstream 535824 23978978 ~ 23980268 (+) False XLOC_009900
TCONS_00019760 mRNA upstream 538567 23976227 ~ 23977525 (+) True XLOC_009892
TCONS_00019768 mRNA downstream 102372 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019769 mRNA downstream 108020 24632096 ~ 24645570 (+) True XLOC_009906
TCONS_00019770 mRNA downstream 157101 24681177 ~ 24695891 (+) False XLOC_009907
TCONS_00019771 mRNA downstream 157150 24681226 ~ 24695887 (+) False XLOC_009907
TCONS_00019772 mRNA downstream 160031 24684107 ~ 24695887 (+) True XLOC_009907
TCONS_00019751 other upstream 553163 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 661481 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 908740 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 1116932 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2812413 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019777 other downstream 357046 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 374095 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 381480 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 571407 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 741723 25265799 ~ 25271837 (+) True XLOC_009933

Expression Profile

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