RNA id: CI01000306_00693218_00693943.mRNA



Basic Information


Item Value
RNA id CI01000306_00693218_00693943.mRNA
length 1342
RNA type mRNA
GC content 0.43
exon number 1
gene id CI01000306_00693218_00693943
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 693218 ~ 694559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCCTTACCTCATCCACACGGCTCACGCCCAGTTCGTGGCTCTCTGGCTCGGGACGGTCGGCTGGATCCTCATCATAGTGACCGTCGGGCTGGTGGAGTGGCGGGTTTGGGAAGTGTCTGACCTGTCTGTCATCACCTCCGGTCTGGCCTGGGTGGGTATTTGGAGAGTGTGTTTTTATAGTCACGTTCTGATCTTATCCAACAATCAGATCATGTTCTGTCAGAGGATTCATTTGTCGGAGTCGTTCACGCCACTGGAAATCGCCACGGCACAGGTGCTCATGCTAGTGGCGCTGATTCTGGGGCTCATGGGAAACGCCAGTGTTGTTTACGGCCTCAGGAACGTTTACTTCGGACTGAACACGTTTAAAGCCATCAGACGATCGTTTTACACCGGCGGGGTTTTGTTCATCCTCACCGCAGCTGCTGCGCTCGTTCCCGTGTGCTGGAATCTCCATTCGGTCGTAAACAATCAGACTATAATATTCCCAGCAGCGTTTCTCATGCCTCCCGCTCCTGTAAACCAGTCTGTTGGACCTGGTATCATCGTGGGGATTTTTGCATCCGTCCTGTTGGTCTGTAGCGGGGTGGTTTTTCTGTCCTACAGGGTCCCGGTCATACTGGAGCCCAAAGTGAGGCCCTCATGGCCCGGAGAAGGATGCTCGGGAACCCGTGTTAACCCCCAGGGAATTGACAATCCAGCTTTCCAAACACATCCATCCTGAAATTCAGTTTTTAGGATGGATGTGAGTGTGTGATGACTATCAGTAGCTAATTATGATGCTGTGTTCATACTGTAACTTTTACTGTACAAACACTGCCAGACCCAGGAGACCCTCATAATCAAATAATACTAATAATGTGCAAACTATATTTTCCAGAAAATAAGTCAGATATGTAGCAAATTTACATTCTTAAAAGGAAAAACACACAGATAAAGACGCATTTTATTATTATCTACGTTCAGAAATAATGTAAAATACTGGTAGGCCTAAATAAAATGAAACGTTTACAGACATTAAACACTAAAAACTTATTTTATTTCCCCTCATTCCACAACAAATTCTCAGGAACAGATCAGGAATGAAAAATATAAGTAGGCCTATAATGGCATTCATTATAAACGCCACGAATACAAAGTCACTTTGGAATATAAGTCGCAGCACGTTTCAAATAATAAAAAACGGGACTTATATTCTGGAAAATGTTATCTATTTTCATCTGTTTACATACTTTCTGCATTGAATTTTACTTTTTTTTTGCCATTGTTTTTGTGCTTTTATCTCATTTTGTATAATGTATTTGAATTGTTTAAAGGGTCTGTCATTGAGATGTGTATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU493842 lncRNA upstream 46174 564976 ~ 647044 (+) True G430075
TU493938 lncRNA upstream 80627 608747 ~ 612591 (+) True G430170
TU493974 lncRNA upstream 84927 605291 ~ 608291 (+) True G430206
TU493863 lncRNA upstream 109097 580251 ~ 584121 (+) True G430095
TU493957 lncRNA upstream 130706 558552 ~ 562512 (+) True G430189
TU494114 lncRNA downstream 7424 701983 ~ 702194 (+) True G430331
TU494113 lncRNA downstream 17999 712558 ~ 714524 (+) True CI01000306_00705287_00711760
TU494118 lncRNA downstream 35344 729903 ~ 730241 (+) True G430335
TU494127 lncRNA downstream 111958 806517 ~ 806752 (+) True G430344
TU494180 lncRNA downstream 212764 907323 ~ 913761 (+) True G430389
CI01000306_00681384_00689565.mRNA mRNA upstream 3406 681384 ~ 689812 (+) True CI01000306_00681384_00689565
CI01000306_00664788_00672147.mRNA mRNA upstream 20166 664721 ~ 673052 (+) True CI01000306_00664788_00672147
CI01000306_00630572_00641931.mRNA mRNA upstream 51092 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00571360_00574170.mRNA mRNA upstream 118683 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00546664_00553895.mRNA mRNA upstream 139117 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00705287_00711760.mRNA mRNA downstream 10728 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_00730637_00781399.mRNA mRNA downstream 36078 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00887579_00889885.mRNA mRNA downstream 192631 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_01008614_01011977.mRNA mRNA downstream 314055 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_01047698_01080329.mRNA mRNA downstream 353139 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
TU494062 other upstream 455849 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 230985 925544 ~ 999902 (+) True G430409
TU494250 other downstream 456038 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 515174 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1453823 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2278597 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile