RNA id: CI01000306_01008614_01011977.mRNA


Basic Information

Item Value
RNA id CI01000306_01008614_01011977.mRNA
length 423
RNA type mRNA
GC content 0.53
exon number 3
gene id CI01000306_01008614_01011977
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1008614 ~ 1011977 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACACTAAAGTCATGGCAGCAAATAAGAGCAAAAATCAGAGTTCGCTGGTGCTGCACAAGGTGATCATGGTGGGCAGCGGCGGCGTGGGAAAATCCGCCCTCACGCTGCAGTTCATGTATGACGAGTTTGTGGAGGACTACGAACCCACCAAGGCTGACAGTTACAGGAAGAAGGTGGTCCTGGATGGAGAGGAGGTGCAGATTGATATTCTGGACACGGCGGGACAGGAAGACTACGCTGCCATCAGGGATAACTACTTCCGCAGCGGAGAGGGTTTCCTCCTGGTTTTCTCCATCACAGAGCCGGAGTCCTTCAGCGCCACGTCAGAGTTCAGGGAGCAGATCCTGAGAGTGAAAGCAGAGGAGGATAAAATCCCTCTGTTAGTGGTGGGGAATAAGTCTGATCTGGAGGACAGGAGGCAG

Function

GO:

id name namespace
GO:0060178 regulation of exocyst localization biological_process

KEGG:

id description
K07835 RALB; Ras-related protein Ral-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494215 lncRNA upstream 23676 984515 ~ 984938 (+) True G430419
TU494180 lncRNA upstream 94853 907323 ~ 913761 (+) True G430389
TU494127 lncRNA upstream 201862 806517 ~ 806752 (+) True G430344
TU494118 lncRNA upstream 278373 729903 ~ 730241 (+) True G430335
TU494113 lncRNA upstream 294090 712558 ~ 714524 (+) True CI01000306_00705287_00711760
TU494221 lncRNA downstream 21243 1033220 ~ 1045108 (+) True G430425
TU494230 lncRNA downstream 58391 1070368 ~ 1071227 (+) True G430433
TU494191 lncRNA downstream 70551 1082528 ~ 1084265 (+) True G430397
TU494231 lncRNA downstream 83294 1095271 ~ 1095590 (+) True G430434
TU494203 lncRNA downstream 104841 1116818 ~ 1119768 (+) True G430407
CI01000306_00887579_00889885.mRNA mRNA upstream 117906 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 227215 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 296029 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_00693218_00693943.mRNA mRNA upstream 314055 693218 ~ 694559 (+) True CI01000306_00693218_00693943
CI01000306_00681384_00689565.mRNA mRNA upstream 318802 681384 ~ 689812 (+) True CI01000306_00681384_00689565
CI01000306_01047698_01080329.mRNA mRNA downstream 35721 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01209847_01210850.mRNA mRNA downstream 197418 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 212173 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 266253 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 281691 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
TU494205 other upstream 8712 925544 ~ 999902 (+) True G430409
TU494062 other upstream 771245 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494250 other downstream 138620 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 197756 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1136405 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1961179 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2762167 3774144 ~ 3774262 (+) True G431188

Expression Profile