RNA id: CI01000306_01278230_01279369.mRNA



Basic Information


Item Value
RNA id CI01000306_01278230_01279369.mRNA
length 671
RNA type mRNA
GC content 0.49
exon number 2
gene id CI01000306_01278230_01279369
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1278230 ~ 1279484 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGTCTCACAGAAACCCTTCCAGATTCAAACCAGGGTCGACTAGAGGAGTTTGTGGCCAACCCATCCTCTGAGTGTGACAGGAGGAGGGGCGTTTGTGTGTTGGAGTTTGGGGGGAGACGCTCTTCTGAATGGATAGAGTGGGAAGACGAACAATCAGAGAGACAGCAGCATGCACGTCTCCTCTTGGACATTAGACTGGGACGGAAACCTTTCGGATATCTTGGATTTAAACTAGCACTGAAAGAAGGAGCAAAAAAGAGCTTTTCGTACTCTGTTGTTCCTTCCCATTCCGTGGTTTCCTGGGAGGAATCTGGAAATAGTTTCCCTCTCGGTCAGGGATCATGGATTTGGAGTGGGCGTCCGGGGGCCCCGAGGGCTTCTACCAGGAGCCGAGCTTCCCCGCGCAAATGCCCTTCAACTACAACCAGCTTGAGGGGCGTTTCAAGCAGCTGCAAGATCAATACATGTGCGCGAGGCATTTTGCACTTCACACATTCAGCGATTTCACACATGCTCTCGTTTGCCATTACTGTAGTGCAGATGTTTGTGTTTTGAGTCTCATGCATCGCTTCTAACAACCCAAGCATGCATCATGCGTGCATGATAAGATTGCTCAAGTACAACTAGTATGAAACGAGTCATTTTAAATAAGCGACTCTGATATCAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU493881 lncRNA upstream 8115 1236345 ~ 1270115 (+) True G430113
TU494280 lncRNA upstream 84270 1193748 ~ 1193960 (+) True G430478
TU494279 lncRNA upstream 85511 1192517 ~ 1192719 (+) True G430477
TU494272 lncRNA upstream 104324 1173686 ~ 1173906 (+) True G430470
TU494269 lncRNA upstream 109667 1168012 ~ 1168563 (+) False G430467
TU493910 lncRNA downstream 5206 1284690 ~ 1286761 (+) True G430142
TU493950 lncRNA downstream 9241 1288725 ~ 1289910 (+) True G430182
TU494292 lncRNA downstream 43579 1323063 ~ 1324428 (+) True G430489
TU494295 lncRNA downstream 105150 1384634 ~ 1384851 (+) True G430492
TU494301 lncRNA downstream 116268 1395752 ~ 1395970 (+) True G430497
CI01000306_01224349_01255175.mRNA mRNA upstream 22758 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01209847_01210850.mRNA mRNA upstream 66998 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01047698_01080329.mRNA mRNA upstream 195971 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 266253 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 387522 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_01293889_01308316.mRNA mRNA downstream 14184 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 28944 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01315927_01321358.mRNA mRNA downstream 36048 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01329678_01378388.mRNA mRNA downstream 50194 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01387861_01391135.mRNA mRNA downstream 108118 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
TU493892 other upstream 59673 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 127292 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 278328 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1040861 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 868898 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1693672 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2494660 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2494699 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2498568 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile