RNA id: TU494321


Basic Information

Item Value
RNA id TU494321
length 243
lncRNA type sense_over
GC content 0.49
exon number 1
gene id CI01000306_01429843_01430151
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1427779 ~ 1430275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTCAGTAACCGCCTCATAAACTAAACCTGAGACTAACAAATCTATTGTGTCTGTGTCCTTTGCACTTATGTCTGCCCTGACCGCCTTCTATCCCACAATGCTCCTCTGTTCAGAGGTCGTCCCGGGAGAACGGCACATAAAGGACGTGAAGCCTATATCACAAGGTTCATATAACACTGTGACCGAAGCGAAGAGTCTCGAGTCCACGGCAGAAGTGGAGAAAGAGGTTTCCTCACTCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494320 lncRNA upstream 904 1427779 ~ 1428870 (+) False CI01000306_01429843_01430151
TU494313 lncRNA upstream 14168 1415207 ~ 1415606 (+) True G430509
TU494308 lncRNA upstream 21214 1408330 ~ 1408560 (+) True G430504
TU494306 lncRNA upstream 22525 1407030 ~ 1407249 (+) True G430502
TU494303 lncRNA upstream 29941 1399618 ~ 1399833 (+) True G430499
TU494322 lncRNA downstream 1073 1431089 ~ 1431487 (+) True G430515
TU493929 lncRNA downstream 7079 1437095 ~ 1439973 (+) True G430161
TU494343 lncRNA downstream 73373 1503389 ~ 1503601 (+) True G430533
TU494344 lncRNA downstream 76613 1506629 ~ 1506862 (+) True G430534
TU493901 lncRNA downstream 99136 1529152 ~ 1531757 (+) True G430133
CI01000306_01387861_01391135.mRNA mRNA upstream 37453 1387602 ~ 1392321 (+) True CI01000306_01387861_01391135
CI01000306_01329678_01378388.mRNA mRNA upstream 51264 1329678 ~ 1378510 (+) True CI01000306_01329678_01378388
CI01000306_01315927_01321358.mRNA mRNA upstream 107480 1315532 ~ 1322294 (+) True CI01000306_01315927_01321358
CI01000306_01308428_01312462.mRNA mRNA upstream 116904 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
CI01000306_01293889_01308316.mRNA mRNA upstream 121458 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01481595_01481955.mRNA mRNA downstream 51579 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01578460_01578838.mRNA mRNA downstream 148444 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01627469_01632656.mRNA mRNA downstream 197453 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01639496_01661857.mRNA mRNA downstream 209049 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01679537_01704400.mRNA mRNA downstream 249521 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
TU493892 other upstream 211217 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 278836 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 429872 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1192405 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 718366 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1543140 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2344128 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2344167 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 2348036 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile